Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012123.1 Corchorus olitorius cultivar O-4 contig12156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63658

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2252--2337
3
28.7
3
100
0
172
66
0
0
33
0.92
7577--7614
13
2.9
13
92
0
67
21
44
7
26
1.79
11479--11523
13
3.3
13
87
6
63
20
0
0
80
0.72
11732--11765
16
2.1
16
89
10
52
0
14
0
85
0.60
18807--18855
19
2.6
19
86
0
80
42
28
4
24
1.73
18830--18881
27
1.9
27
92
0
86
42
26
3
26
1.73
18811--18929
46
2.6
46
98
0
229
41
25
5
28
1.76
18857--18901
19
2.4
19
85
7
65
42
24
4
28
1.74
18876--18927
27
1.9
27
88
7
79
42
25
3
28
1.72
22327--22384
20
2.8
20
78
17
57
72
1
20
5
1.13
22321--22391
25
2.8
26
85
6
92
70
2
21
5
1.21
25266--25294
1
29.0
1
100
0
58
100
0
0
0
0.00
28622--28658
19
1.9
19
94
0
65
37
13
18
29
1.90
28843--28891
2
26.0
2
88
12
77
53
0
0
46
1.00
29047--29084
19
2.1
19
85
5
51
15
23
7
52
1.69
36437--36540
53
1.9
54
98
1
201
50
7
5
35
1.55
38379--38518
69
2.0
68
86
4
192
24
12
15
47
1.80
43501--43541
2
20.5
2
100
0
82
51
48
0
0
1.00
46175--46261
41
2.1
41
86
4
120
24
5
19
50
1.69
46520--46562
22
2.0
22
86
9
61
65
2
9
23
1.34
60743--60810
2
34.0
2
100
0
136
50
50
0
0
1.00

Tables:   1

The End!