Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012125.1 Corchorus olitorius cultivar O-4 contig12158, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28482

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--127
17
2.0
18
88
5
54
65
17
0
17
1.27
93--128
18
2.0
18
88
0
54
66
16
0
16
1.25
137--222
43
2.0
43
97
0
163
36
13
12
37
1.84
177--280
52
2.0
51
85
7
140
27
14
18
39
1.89
4892--4932
5
7.8
5
94
5
64
78
0
0
21
0.76
5039--5077
14
2.9
14
88
3
53
41
12
10
35
1.77
6738--7537
107
7.5
107
86
5
663
17
18
24
39
1.91
6738--7537
72
11.2
72
80
5
765
17
18
24
39
1.91
6738--7537
35
22.5
36
77
6
765
17
18
24
39
1.91
11505--11590
43
2.0
43
95
0
154
37
13
11
37
1.82
11545--11648
52
2.0
51
83
7
131
28
14
17
39
1.89
25531--25560
15
1.9
16
93
6
53
70
6
6
16
1.31

Tables:   1

The End!