Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012126.1 Corchorus olitorius cultivar O-4 contig12159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76156

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15068--15150
38
2.2
38
97
0
157
27
18
24
30
1.98
22649--22733
44
1.9
44
97
0
161
41
11
17
29
1.85
22664--22735
22
3.3
22
63
7
56
41
11
19
27
1.85
23382--23408
3
9.0
3
100
0
54
66
0
0
33
0.92
30175--30228
25
2.2
25
100
0
108
55
7
11
25
1.61
36164--36218
28
2.1
25
81
15
67
43
12
3
40
1.60
38305--38340
19
1.9
18
88
5
54
33
22
2
41
1.68
38691--38725
16
2.2
16
89
0
52
34
2
8
54
1.46
50805--50838
16
2.1
17
94
5
61
0
14
0
85
0.60
52501--52715
100
2.2
100
92
1
351
19
27
32
20
1.97
52624--52773
80
1.9
80
94
2
266
21
24
34
20
1.96
52716--52872
51
3.1
50
65
13
140
21
24
33
20
1.97
52524--53075
181
3.1
181
90
3
812
20
26
32
20
1.97
52891--53254
99
3.6
99
85
4
475
20
24
32
21
1.97
52891--53254
200
1.8
200
86
5
540
20
24
32
21
1.97
56389--56472
45
1.9
43
92
0
123
38
22
5
33
1.79
61320--61457
69
2.0
69
100
0
276
18
11
31
37
1.87
69145--69684
30
17.8
30
87
3
605
28
20
20
30
1.98
74155--74191
11
3.0
13
76
15
51
29
16
0
54
1.43
74148--74190
13
3.5
13
78
12
54
30
18
0
51
1.47
74388--74426
14
2.9
13
80
3
51
41
2
2
53
1.28

Tables:   1

The End!