Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012127.1 Corchorus olitorius cultivar O-4 contig12160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31217

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980--1013
13
2.6
13
100
0
68
26
0
8
64
1.22
980--1036
25
2.2
26
82
14
66
29
0
10
59
1.31
980--1036
13
4.5
13
88
4
64
29
0
10
59
1.31
7835--7902
31
2.3
31
76
5
77
29
25
7
38
1.83
12246--12298
24
2.2
24
86
0
70
20
5
22
50
1.69
19067--19100
6
5.7
6
96
0
50
44
50
5
0
1.26
22046--22080
15
2.2
16
90
5
54
45
0
0
54
0.99
22953--23696
200
3.7
199
93
1
1229
31
19
14
33
1.92
26226--26272
18
2.5
19
79
3
60
74
0
25
0
0.82

Tables:   1

The End!