Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012133.1 Corchorus olitorius cultivar O-4 contig12166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36173

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2692--2739
25
1.9
25
95
0
87
39
10
18
31
1.85
3287--3610
50
6.5
50
94
0
549
28
13
27
30
1.94
3287--3610
151
2.2
150
93
0
549
28
13
27
30
1.94
4223--4409
50
3.7
50
86
0
266
31
15
19
33
1.93
4984--5021
6
6.3
6
88
11
60
15
0
15
68
1.22
4984--5060
19
4.6
18
71
24
69
15
1
14
68
1.27
4986--5054
25
2.8
25
82
12
81
15
1
14
68
1.29
4992--5061
29
2.5
28
80
8
90
15
1
14
68
1.28
5004--5069
33
2.0
32
88
8
96
15
1
13
69
1.26
4984--5054
24
3.0
22
80
17
72
15
1
14
69
1.27
5049--5088
15
2.9
14
89
10
64
15
0
7
77
0.98
9085--9381
52
5.7
52
84
3
382
36
13
18
30
1.90
9078--9381
156
1.9
157
88
3
461
36
13
19
30
1.90
10978--11007
1
30.0
1
100
0
60
0
100
0
0
0.00
14253--14511
66
4.0
62
85
8
238
37
14
24
23
1.92
14316--14536
65
3.4
65
90
2
347
38
14
25
21
1.91
14323--14536
66
3.3
64
90
2
340
37
14
26
21
1.92
14357--14557
97
2.1
98
84
3
262
40
13
24
21
1.89
14548--14935
39
9.9
39
88
0
515
32
18
18
30
1.95
16417--16517
17
6.2
17
71
17
70
17
0
10
70
1.22
16435--16513
32
2.5
32
82
11
108
17
1
10
70
1.21
16464--16503
20
2.0
21
85
5
55
20
2
15
62
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16441--16510
15
4.5
15
83
15
81
17
1
10
71
1.20
16435--16513
17
5.0
15
79
11
79
17
1
10
70
1.21
16903--16954
23
2.4
22
87
6
70
19
13
0
67
1.23
16900--16980
31
2.6
30
82
7
81
17
11
2
69
1.29
16922--16987
30
2.2
29
81
7
78
15
9
4
71
1.28
16936--17108
8
21.6
8
95
3
287
12
1
10
75
1.13
25361--25398
19
2.0
19
100
0
58
10
10
36
42
1.74
25923--26041
27
4.3
28
89
3
161
36
24
18
20
1.94
25925--26028
55
1.9
54
90
2
163
35
25
19
19
1.95
26690--26736
17
2.6
18
87
12
62
12
36
10
40
1.78
29521--29547
2
13.5
2
100
0
54
0
0
51
48
1.00
29943--29983
21
2.0
21
85
0
55
34
21
7
36
1.82
30073--30111
18
2.1
18
85
4
51
41
15
15
28
1.87
32056--32128
26
2.7
27
80
4
85
19
12
26
42
1.86
32280--32338
25
2.4
25
80
8
77
35
16
6
40
1.76
34982--35047
20
3.3
20
83
6
73
48
3
13
34
1.58

Tables:   1

The End!