Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012137.1 Corchorus olitorius cultivar O-4 contig12170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61444

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5943--5992
26
2.0
24
88
11
75
22
14
6
58
1.58
12663--12717
27
2.0
27
100
0
110
38
14
7
40
1.74
13423--14440
440
2.3
441
81
4
1145
31
12
12
42
1.81
29180--29208
10
2.9
10
100
0
58
0
20
41
37
1.53
36642--36711
35
1.9
37
83
16
94
50
7
8
34
1.61
43010--43076
33
2.0
33
91
0
107
26
11
17
43
1.84
44811--44840
2
15.5
2
93
6
53
50
0
0
50
1.00
46844--46924
22
3.8
21
82
8
92
46
9
7
35
1.65
48671--48787
60
2.0
60
100
0
234
27
16
17
39
1.90
52977--53021
21
2.0
23
83
8
58
60
2
0
37
1.09
56582--56856
74
3.7
73
85
3
329
31
15
14
37
1.88
57896--57924
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!