Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012140.1 Corchorus olitorius cultivar O-4 contig12173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53213

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2883--3072
22
8.6
22
71
15
83
40
8
16
33
1.80
2909--3072
22
7.5
22
72
11
115
41
8
16
33
1.79
10975--11036
11
5.9
10
78
10
70
0
32
58
9
1.31
10975--11036
5
11.8
5
80
10
70
0
32
58
9
1.31
10966--11041
16
4.8
16
100
0
152
0
30
56
13
1.37
12089--12150
28
2.3
27
81
10
72
30
4
14
50
1.64
12811--12843
11
3.0
11
91
8
50
42
0
3
54
1.15
15902--15934
11
3.0
11
86
13
50
3
24
0
72
0.98
27896--27937
20
2.1
20
90
0
66
40
4
0
54
1.21
30548--30586
19
2.1
19
90
0
60
20
25
10
43
1.83
30637--30695
19
3.0
20
85
7
84
27
18
13
40
1.88
35080--35106
2
13.5
2
100
0
54
51
0
0
48
1.00
49175--49228
23
2.3
23
81
6
56
57
3
7
31
1.44
50306--50330
12
2.1
12
100
0
50
56
0
0
44
0.99
51248--51280
17
1.9
17
100
0
66
39
18
0
42
1.50

Tables:   1

The End!