Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012141.1 Corchorus olitorius cultivar O-4 contig12174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3676
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32


Found at i:776 original size:25 final size:25

Alignment explanation


    Indices: 748--839  Score: 121
    Period size: 25  Copynumber: 3.7  Consensus size: 25

        738 CGCTCATGTT

                *    *               
        748 CTTGTGTTTGGAAAACGAGCCTGTG
          1 CTTGCGTTTAGAAAACGAGCCTGTG

                     *        ***    
        773 CTTGCGTTTGGAAAACGAATATGTG
          1 CTTGCGTTTAGAAAACGAGCCTGTG

                       *             
        798 CTTGCGTTTAGCAAACGAGCCTGTG
          1 CTTGCGTTTAGAAAACGAGCCTGTG

                             
        823 CTTGCGTTTAGAAAACG
          1 CTTGCGTTTAGAAAACG

        840 CATAGGCTAC


Statistics
Matches: 57,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  25   57  1.00

ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30


Consensus pattern (25 bp):   
CTTGCGTTTAGAAAACGAGCCTGTG
Done.