Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012143.1 Corchorus olitorius cultivar O-4 contig12176, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2711
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35


Found at i:2645 original size:6 final size:6

Alignment explanation


    Indices: 2634--2675  Score: 50
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       2624 TCGTTTGGCA

                                   *      *                  
       2634 TCGTTT TCGTTT TCTGTTT TTGTTT TTG-TT TCGTTT TCGTTT
          1 TCGTTT TCGTTT TC-GTTT TCGTTT TCGTTT TCGTTT TCGTTT

       2676 GTTTTTATTG


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   5    4  0.12
   6   23  0.72
   7    5  0.16

ACGTcount: A:0.00, C:0.12, G:0.17, T:0.71


Consensus pattern (6 bp):   
TCGTTT
Done.