Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012144.1 Corchorus olitorius cultivar O-4 contig12177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51082

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10588--10646
21
3.0
19
82
5
73
30
20
13
35
1.91
19674--19710
17
2.3
15
90
9
56
37
0
0
62
0.96
19671--19710
20
2.0
20
95
0
71
37
0
0
62
0.95
28215--28333
61
2.0
61
88
3
177
27
24
13
34
1.93
38597--38682
31
2.8
30
82
6
120
31
20
12
34
1.91
40393--40431
14
2.9
13
88
7
60
79
0
20
0
0.73
42771--42915
70
2.1
70
100
0
290
44
8
13
33
1.73
43279--43364
32
2.7
32
90
0
127
38
12
18
30
1.88
46291--46558
107
2.5
107
86
3
362
42
8
8
40
1.64
47934--47992
29
2.0
29
100
0
118
50
32
6
10
1.62
48315--48339
1
25.0
1
100
0
50
100
0
0
0
0.00

Tables:   1

The End!