Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012148.1 Corchorus olitorius cultivar O-4 contig12181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19696

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623--752
22
5.9
22
75
7
102
40
13
14
31
1.84
623--747
44
2.8
44
86
0
160
41
13
12
32
1.81
790--849
22
2.7
22
82
12
70
41
1
21
35
1.63
878--1094
22
9.8
23
72
11
73
32
11
18
37
1.87
878--1081
44
4.6
44
69
10
137
31
11
18
37
1.87
2869--2973
44
2.4
44
83
0
138
38
12
13
36
1.82
2870--3022
22
6.8
22
71
8
94
40
11
12
35
1.80
2852--3081
22
10.4
22
66
14
89
41
10
12
36
1.76
3069--3243
82
2.1
82
95
1
316
37
10
18
34
1.85
3111--3248
44
3.3
43
68
19
128
39
10
18
31
1.84
3283--3512
22
10.3
22
75
6
167
33
12
16
38
1.86
4972--5009
19
2.0
19
100
0
76
42
15
0
42
1.47
5803--5864
6
10.3
6
82
6
54
27
0
9
62
1.26
5822--5862
12
3.4
12
96
0
73
19
0
14
65
1.26
5822--5862
18
2.3
18
95
0
73
19
0
14
65
1.26
19321--19375
6
9.5
6
82
7
51
25
47
27
0
1.52
19323--19368
11
4.1
11
91
5
74
21
52
26
0
1.47
19325--19374
11
4.4
11
82
7
55
22
50
28
0
1.49
19323--19374
17
3.1
16
81
13
59
23
50
26
0
1.50
19324--19368
23
2.0
23
95
0
81
20
53
26
0
1.46
19546--19580
2
18.0
2
94
5
63
48
0
0
51
1.00

Tables:   1

The End!