Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012152.1 Corchorus olitorius cultivar O-4 contig12185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20367

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2479--2561
6
13.7
6
78
15
66
2
18
0
79
0.84
2484--2555
26
2.7
26
85
10
85
2
16
0
80
0.83
2479--2561
16
5.1
16
81
8
87
2
18
0
79
0.84
2643--2670
12
2.3
12
100
0
56
0
17
0
82
0.68
3535--3564
2
15.0
2
100
0
60
50
0
0
50
1.00
5411--5535
44
2.8
43
85
2
142
40
14
13
31
1.85
5411--5647
22
10.9
22
71
11
121
39
11
18
30
1.86
5768--5911
22
6.6
21
79
6
119
32
13
15
38
1.87
5774--5901
44
2.9
43
80
7
143
32
12
17
36
1.88
9960--10036
32
2.4
32
82
6
93
29
19
16
33
1.94
11365--11429
32
2.0
32
81
0
76
32
23
23
21
1.98
11387--11539
64
2.4
64
84
0
198
25
24
22
27
2.00
11387--11539
32
4.8
32
82
1
155
25
24
22
27
2.00
12101--12132
7
4.6
7
100
0
64
62
12
0
25
1.30
12205--12415
36
5.8
36
83
6
255
29
15
17
36
1.91
14210--14253
22
2.0
23
90
4
72
50
4
9
36
1.55
19405--19432
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!