Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012155.1 Corchorus olitorius cultivar O-4 contig12188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60673
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:24734 original size:2 final size:2
Alignment explanation
Indices: 24727--24791 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
24717 CTTTAGCTCA
24727 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
24769 AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC A
24792 TATATATATA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:24796 original size:2 final size:2
Alignment explanation
Indices: 24791--24823 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
24781 ACACACACAC
*
24791 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24824 CTCATTCTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:26254 original size:21 final size:21
Alignment explanation
Indices: 26229--26278 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
26219 CAAAAGCGTC
26229 AAAAGGGGGCGATAACTAGCA
1 AAAAGGGGGCGATAACTAGCA
* *
26250 AAAAGGGAGCGGTAACTAGCA
1 AAAAGGGGGCGATAACTAGCA
26271 AAAAGGGG
1 AAAAGGGG
26279 ACGGCATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.36, T:0.08
Consensus pattern (21 bp):
AAAAGGGGGCGATAACTAGCA
Found at i:38732 original size:114 final size:114
Alignment explanation
Indices: 38603--38911 Score: 618
Period size: 114 Copynumber: 2.7 Consensus size: 114
38593 AACTCTCACA
38603 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
1 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
38668 TTCTAGTTTGGGTTGAATTCTCATATGAGAGATTTATTTGAATTGTAAG
66 TTCTAGTTTGGGTTGAATTCTCATATGAGAGATTTATTTGAATTGTAAG
38717 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
1 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
38782 TTCTAGTTTGGGTTGAATTCTCATATGAGAGATTTATTTGAATTGTAAG
66 TTCTAGTTTGGGTTGAATTCTCATATGAGAGATTTATTTGAATTGTAAG
38831 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
1 GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
38896 TTCTAGTTTGGGTTGA
66 TTCTAGTTTGGGTTGA
38912 GATTTGTTTG
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 195 1.00
ACGTcount: A:0.22, C:0.02, G:0.26, T:0.50
Consensus pattern (114 bp):
GAATGTGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGT
TTCTAGTTTGGGTTGAATTCTCATATGAGAGATTTATTTGAATTGTAAG
Found at i:38919 original size:63 final size:63
Alignment explanation
Indices: 38850--38974 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
38840 TTTGTTTGTA
* * *
38850 ATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTAGTTTGGGTTGAG
1 ATTTGTTTGTTTATTTGGTAGATACGTAGTTTATTTATGGTATAGTTTCTAGTTTGAGTTGAG
38913 ATTTGTTTGTTTATTTGGTAGATACGTAGTTTATTTATGGTATAGTTTCTAGTTTGAGTTGA
1 ATTTGTTTGTTTATTTGGTAGATACGTAGTTTATTTATGGTATAGTTTCTAGTTTGAGTTGA
38975 ATTCTCATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.53
Consensus pattern (63 bp):
ATTTGTTTGTTTATTTGGTAGATACGTAGTTTATTTATGGTATAGTTTCTAGTTTGAGTTGAG
Found at i:39517 original size:24 final size:24
Alignment explanation
Indices: 39485--39531 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
39475 ACAGTTAAGA
39485 TCTAAGCTGATTCACTAAATTTAC
1 TCTAAGCTGATTCACTAAATTTAC
39509 TCTAAGCTGATTCACTAAATTTA
1 TCTAAGCTGATTCACTAAATTTA
39532 GTTGGTCAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (24 bp):
TCTAAGCTGATTCACTAAATTTAC
Found at i:47122 original size:31 final size:31
Alignment explanation
Indices: 47066--47218 Score: 166
Period size: 31 Copynumber: 4.9 Consensus size: 31
47056 ACGTGGCATG
*
47066 CCACGTGTACCAAAAAGCGCGACATGTGGCACA
1 CCACGTGTACCAAAAA--GTGACATGTGGCACA
*
47099 CCACGTGTACCAAAAAGCGACATGTGGCACA
1 CCACGTGTACCAAAAAGTGACATGTGGCACA
* ** * *
47130 CCACATGTACCAAAAAGTGACACATGACACG
1 CCACGTGTACCAAAAAGTGACATGTGGCACA
** *
47161 CCATATGTACCAAAAAGTGACATGT--CACG
1 CCACGTGTACCAAAAAGTGACATGTGGCACA
* *
47190 CCATGTGTACCAAAAAGTGACACGTGGCA
1 CCACGTGTACCAAAAAGTGACATGTGGCA
47219 TGCCTCGTGC
Statistics
Matches: 107, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
29 27 0.25
31 64 0.60
33 16 0.15
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.15
Consensus pattern (31 bp):
CCACGTGTACCAAAAAGTGACATGTGGCACA
Found at i:47213 original size:24 final size:24
Alignment explanation
Indices: 47154--47213 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 24
47144 AAGTGACACA
47154 TGACACGCCATATGTACCAAAAAG
1 TGACACGCCATATGTACCAAAAAG
*
47178 TGACATGTCACGCCATGTGTACCAAAAAG
1 TG--A---CACGCCATATGTACCAAAAAG
47207 TGACACG
1 TGACACG
47214 TGGCATGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
24 6 0.20
26 1 0.03
27 1 0.03
29 22 0.73
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (24 bp):
TGACACGCCATATGTACCAAAAAG
Found at i:52014 original size:23 final size:23
Alignment explanation
Indices: 51988--52033 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51978 ATTCACAAAA
51988 TCCCTTACTAGATCTGCTTCGAC
1 TCCCTTACTAGATCTGCTTCGAC
52011 TCCCTTACTAGATCTGCTTCGAC
1 TCCCTTACTAGATCTGCTTCGAC
52034 AATAGCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.35, G:0.13, T:0.35
Consensus pattern (23 bp):
TCCCTTACTAGATCTGCTTCGAC
Found at i:57526 original size:333 final size:329
Alignment explanation
Indices: 53742--60660 Score: 5788
Period size: 333 Copynumber: 21.3 Consensus size: 329
53732 AATTATCAAC
* ** * * * * *
53742 CCAAATCTCAGCCGTATTGGATATAAGGATTAGGTTTTACGAGCATCTAAATATTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * * * * * * *
53807 AATTACAAATTAATTTGAAAAAAATAG-AAAAACGATATTAAAAGCGTGAAAATCCGTCAATCTT
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATCTT
* * * * * * * **
53871 TTTGGCGTAGAAATACATATTTTTTCTGAATATTTT-GCAAAACA-TAAAAAAAAACTTTTC--G
131 TTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTTTTCGGG
** * *
53932 --AG----TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTT
196 TAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGCGTT
* ** * * * * *
53991 CCGGAGC-CCTGACTCAATTTTGCATGATTTTTGGTGCA-A-AGACTCCTCGAAATATATCTAGA
261 TCGGTCCGCCAG-CTCAGTTTTGCATGATTTTT-G-GCAGAGAGACTCCTTG-AA-ATATCAATA
* *
54053 TTAATC-AA
321 TTCACCTAA
* **** * * *
54061 ACAGAATCTCAGCCACGTTGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTATTTCGATT
1 CCA-AATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* * * * * * * *
54126 TAGTTAGAAATTAATTTGGAAAAAATATGGATAAACA--ATATTAGAAGCATGGAAAGCCTGTCA
65 TAATTAGAAA-TAAATTCGAAAAAA-ATGGA-AAAAATGATATTATAAGCGTGAAAACCCT-TCA
* * * * *
54189 ATCTTTTTGGCGTTGAAATATATA-TGTTTCCGAATATTTT-GCAAAAAATTGAGAAAAAACTTT
126 ATCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTTT
* * *
54252 TCCGGTTAG----T----TTTTAGCCGAAATCATGTACTAACCATCACCGTTTTTGGCTAAAAAC
191 TCGGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAAC
* * * *
54309 GCGTTTCGGTGCGCCATCTCAGTTTTGCATGATTTTT-GCAGAGAGACTCTTTGAAATATAAATA
256 GCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATA
*
54373 TTAACCTAA
321 TTCACCTAA
* * *
54382 ACAAATGTCAGCCATAACTGATTTAAGGA--------TACGAGCATCTGAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * * *
54439 AATTAGAAATAAATTAGAAAAAAA--G-AAAAACGATAATAGAAGCGTGAAAAACCCTTCAATCT
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAATCT
* * * ** * * * *
54501 TTTTGGCGTTGAATTATATATTTTTTATGACTATTGCGGCAAAAGATTGAGAAAAAAATTCTCCG
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTT-TTCG
* * *
54566 GGTCAG----T----TTTTAGCCGAAATCGTGTACGT---CATCACGGTTTTTGGCTAAAAAAGC
194 GGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTAC-TAACCATCACCGTTTTTGGCTAAAAACGC
* * * *
54620 GTTTCGGGACC-CCAACTCAGTTTT-CGATGATTTTTTTGGCAGAGAGACTCCTTAAAATATCTA
258 GTTTC-GGTCCGCCAGCTCAGTTTTGC-ATGA--TTTTTGGCAGAGAGACTCCTTGAAATATCAA
*
54683 TATTTATCC-AA
319 TATTCA-CCTAA
* * * ** *
54694 CAAAATCCCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT-TGAATCTTGTTTCGATAT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * *
54758 AATTAGAAATAAATTCGAAAAAAAAT-GTAAAAACGATATTATAAGCGTGAAAACCCTTCAATTT
66 AATTAGAAATAAATTCG-AAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATCT
* * *
54822 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTGTGGAAAAAAAATTGAGGAGAAACTTTTCG
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGG-CAAAAAATTGAGGAAAAACTTTTCG
54887 GGTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACG
194 GGTAAGTTTTT-C-AAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACG
* * * *
54952 CGTTTCGGTTCGCCAGCTCAGTTTTGAAGGATTTTTGGCAGAGAGACTTCTTGAAATATCAATAT
257 CGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATAT
55017 TCACCTAA
322 TCACCTAA
* * *
55025 CCAAATGTCAGTCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
** *
55090 AATTAGAAATAAATTCGAAAAAAAT-GAAAAAGATGATATTATAATTGTGAAAACCCTTCACT-T
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAA-ATGATATTATAAGCGTGAAAACCCTTCAATCT
* * *
55153 TTTTGGCGTTGAATTATATAGTTATTCTGAGTATTGTGGCAAAACAATTGAGGAAAAACTTTTTG
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAA-AATTGAGGAAAAACTTTTCG
* *
55218 GGTAAGTTTTTGCAGAATTTTAGACGAAATCGTGTACTAACAATCA-CGATATTTTGGCTAAAAA
194 GGTAAGTTTTT-CA-AATTTTAGCCGAAATCGTGTACTAACCATCACCG-T-TTTTGGCTAAAAA
* * * *
55282 C-CCTTTCTGAAGTTCG--A-CTCAATTTTGCATGATTTTTGGTGCA-A-AGACTCCTTGAAGTA
255 CGCGTTTC-G--GTCCGCCAGCTCAGTTTTGCATGATTTTT-G-GCAGAGAGACTCCTTGAAATA
* * * *
55341 TCCATATTTATC-GA
315 TCAATATTCACCTAA
* * * * * * *
55355 CCAAAATCTCAGCCGTATA-GGATATAAGGATTAGCTTTTACGATCATCTAAATATTGTTTCGAT
1 CC-AAATCTCAGCCATA-ACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
* * * * *
55419 TTAATTAGAAATTAATTTGAAAAAAATAG-AAAAACGATATTAAAAGCGTGAAAACCCGTT-AAT
64 TTAATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCC-TTCAAT
* * ** * * * * * * * * *
55482 GTTTTTGGCATAAAAATACATATTTTTTATGAATATTAT-GCAAAACATTAAGAAAAAACTTTTC
128 CTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTTTTC
* * * *
55546 GGGTCAG----T----TTTTAGCCGAAATCGTGTACTAATCATCACAGTTTTTGGCTAATAACGC
193 GGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGC
* * *
55603 GTTCCGGAGCC-CC-GACTCAATTTTGCATGATTTTTGGTGCA-A-AGACTCCTTGAAATGTATC
258 GTTTCGG-TCCGCCAG-CTCAGTTTTGCATGATTTTT-G-GCAGAGAGACTCCTTGAAA--TATC
* * * * *
55664 TAGATTAATCGAA
317 AATATTCACCTAA
* * ** * ** * * * *
55677 -CAGAATCTCAGTCACATTGGATATAACAATTTGCTTTTACGAGCATCTGAATGTTATTTCAATT
1 CCA-AATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* * * * * *
55741 TAGTTAGAAATTAATTCGGAAAAAATATGGATAAACA--ATATTAGAAGCATG-GAACGCCTTTC
65 TAATTAGAAATAAATTC-GAAAAAA-ATGGA-AAAAATGATATTATAAGCGTGAAAAC-CC-TTC
* * * * **
55803 AATATTTTTGGCGTTGAAATATATA-TTTTTCCGAATATTTT-GCAAAAAACTTCAGAAAAAAAA
125 AATCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAA-TT--GAGGAAAAA
* * *
55866 CTTTTCGGGTTAG----TC----TTTAGCCGAAATCATGTACTAACCATCACCGTTTTAGGCTAA
187 CTTTTCGGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAA
* * * * *
55923 AAACGCGTTTCGATGCGCCAGCTCAGATTTGGATGATATTTGGCAGAGAGACT-CTTGAAATATC
252 AAACGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATC
*
55987 AATATTCACCGAA
317 AATATTCACCTAA
* *
56000 CCAAATGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCTTCTGAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* *
56065 AATTAGAAATAAATTAGAAAAAAA--G-----ATGATATTAGAAGCGTGAAAAACCCTTCAATCT
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAATCT
* * * ** * * *
56123 TTTTGGCGTTGAATTATATATTTTTTATGACTATTGCGGCAAAATATTGA-GAAAAAATTCTTTG
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTT-TTCG
* * *
56187 GGTCAG----T----TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAACCGCG
194 GGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGCG
* * * * *
56244 TTTCGGGACC-CCAGCTCAATTTTGGATGATTTTTGGCAGAGAGACT-CTTAAAAATATCTATAT
259 TTTC-GGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTT-GAAATATCAATAT
*
56307 TTATCC-AA
322 TCA-CCTAA
* * * * ** * * * *
56315 CAAAATCCCAGGCACATTGGATTTAAGGGTTTGTTTTTACGAGTAT-TGAATTTTGTTTCGATAT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
*
56379 AATTAGAAATAAATTCG-AAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATTTT
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATCTT
* * *
56443 TTTGGCGTTGAATTACATAGTTTTTCTGAGTATTGTGGCAAAAAAATTGAGGAGAAACTTTTCGG
131 TTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC-AAAAAATTGAGGAAAAACTTTTCGG
* * *
56508 GCAAGTTTTTGCAAAATTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGACTAAAAACGCG
195 GTAAGTTTTT-CAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGCG
** * * * *
56573 TTTCGGTGAGCCAACTCAATTTTGTATGATTTTTGGCAGAGAGACTACTTGAAATATCAATATTC
259 TTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTC
56638 ACCTAA
324 ACCTAA
* * *
56644 CCGAATGTCAGCCATAACGGATTTAAGGATTCGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
** * * *
56709 AATTAGAAATAAATTATAAAAAAAAAGG-AAAAACGATATTAGAAGCGTGAAAAACCCTTCAATC
66 AATTAGAAATAAATT-CGAAAAAAATGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAATC
** * * * * ** * *
56773 TTTTTGGATTTGAATTATATACTTTTTATAAATATTGCGGCAAAATATTGA-GAAAAATTTCTTC
129 TTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTT-TTC
** * * * *
56837 -GG--A-----TCAGTTTTTAGCCGAATTCGTG---T-A-CGTCACGGTTTTTGGGTAAAAACGC
193 GGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGC
**** * * *
56889 GTTTCGGGATACCAGCTCAGTTTTGGATGATTTTTGGCAGAGAGACTCCTTAAAATATCTATATA
258 GTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATAT-
56954 T-ATCC-AA
322 TCA-CCTAA
* * * ** ** * *
56961 CAAAATCCCAGCCACATTGGATTTAAGGATTTGTTTTTGTGAGCAT-TTAATCTTGTTTCGATAT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
** *
57025 AATTAGAAATAAATTCGAAAAAAAT-GAAAAAATGATATTATAATTGTGAAAACCCTTTAAAT-T
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCC-TTCAATCT
*
57088 TTTTGGCTTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAAAATTGAGGAAAAACTTTT
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC---AAAAAATTGAGGAAAAACTTTT
* * * *
57153 CGGGTAAGTTTTTGGAAAATTTTAGCCAAAATCTTGTACTAACCATCACCGTTTTTTGCTAAAAA
192 CGGGTAAGTTTTT--CAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAA
* *
57218 CGCGTTTCGGTCCGCTAGCTCAGTTTTGCATGATTTTTGGCAGAGACACTCCTTGAAATATCAAT
255 CGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAAT
57283 ATTCACCTAA
320 ATTCACCTAA
* * *
57293 CCAAATGTCAGCCATAACAGATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
*
57358 AATTAGAAATAAATTTGAAAAAAATCGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAAAT-
66 AATTAGAAATAAATTCGAAAAAAAT-GGAAAAAATGATATTATAAGCGTGAAAACCCTTC-AATC
* *
57422 TTTTTGGCGTTGAATTATATAGTTTTTATGAGTATTTTGGCAGAAAAATTGAGGAGAAACTTTTC
129 TTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCA-AAAAATTGAGGAAAAACTTTTC
* * *
57487 GGGTAAGTTTTTGCAAAAATTTAGACGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAC
193 GGGTAAGTTTTT-C-AAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAAC
* * * * * *
57552 GCATTTCGGAACC-CCAGCTCAGTTTTGGATGATTTTTGGCAAAGAGACACCTT-ATAATATCTA
256 GCGTTTCGG-TCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGA-AATATCAA
*
57615 TATTTATCC-AA
319 TATTCA-CCTAA
* * * * *
57626 CAAAATCCCAGCCA-AATTGGATTTAAGGATTTGTTTTTACGAGCAT-TTAATCTTGTTTCGATA
1 CCAAATCTCAGCCATAA-CGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* **
57689 TAATTAGATATAAATTCGAAAAAAAATCGAAAAAAATTGAAAAAATGATATTATAATTGTGAAAA
65 TAATTAGAAATAAATTCG-AAAAAAAT-G---------GAAAAAATGATATTATAAGCGTGAAAA
*
57754 CCCTTTAAAT-TTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAATTGAGG
119 CCC-TTCAATCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC-AAAAAATTGAGG
* * * *
57818 AAAAACCTTTCGGGTAAGTTTTTTAAAAATTTCAGCCGAAATCGTGTATTAACCATCACCGTTTT
182 AAAAACTTTTCGGGTAAG-TTTTT-CAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTT
* * * * * * * * *
57883 TTGCTAAATACGTGTTTCGGTCCGCTAGCTCAGTTATGCATGATTTTAGGCAGATACACTCCTTC
245 TGGCTAAAAACGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTG
57948 AAATATCAATATTCACCTAA
310 AAATATCAATATTCACCTAA
*
57968 CCAAATGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
** * *
58033 AATTAGAAATAAATTATAAAAAAA-GG-AAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCT
66 AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAATCT
* * * ** * *
58096 TTTTGGCTTTGAATTATATA-TTTCTTATGACTATTGCGGCAAAATATTGA-GAAAAATTTCTTC
130 TTTTGGCGTTGAATTATATAGTTT-TTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTT-TTC
** **
58159 -GG--A-----TCAGTTTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTTGGCTAAAAACG
193 GGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCG-TTTTTGGCTAAAAACG
** * * * *
58216 CGTTTCGGGACACCAACTCAGTTTTGGATGATTTTTGGCAGAGAGACTCCTTAAAATATCTAA-A
257 CGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATC-AATA
58280 TAT-ATCC-AA
321 T-TCA-CCTAA
* * * ** * ** * *
58289 CAAAATCCCAGCCACATTGGATTCAAGGATTTGTTTTTGTGAGCAT-TTAATCTTGTTTCGATAT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* ** *
58353 AATTAGAAATAAAATCGAAAAAAAATCGAAAAAAAATGAAAAAATGATATTATAATTGTGCAAAC
66 AATTAGAAATAAATTCG-AAAAAAAT-G---------GAAAAAATGATATTATAAGCGTGAAAAC
* *
58418 CCTTTAAAT-TTTTTGGCTTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAAATTGAGG
120 CC-TTCAATCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC--AAAAAATTGAGG
* * *
58482 AAAAACTTTTCGGGTAAGTTTTTGGAAAATTTTAGCCAAAATCTTGTACTAACCATCACCGTTTT
182 AAAAACTTTTCGGGTAAGTTTTT--CAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTT
* * *
58547 TTGCTAAAAACGCGTTTCGGGAT-C-CCAGCTCA-TTTTGGATGATTTTTGGTAGAGAGACTCCT
245 TGGCTAAAAACGCGTTTC-GG-TCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCT
* * * *
58609 TCAAATATCTATATTTATCTAA
308 TGAAATATCAATATTCACCTAA
** * * * *
58631 AAAAATCCCAGCCACATTC-AATTTAAGGATTTG-TTTT-----CA-C-G-A----G---C-ATT
1 CCAAATCTCAGCCATA-ACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* * ** *
58678 TAA-T--AAATAAATTTGAAAAAAAAT-TAAAATAATGATATTATAATTGTGAAAACCCTTTAAA
65 TAATTAGAAATAAATTCG-AAAAAAATGGAAAA-AATGATATTATAAGCGTGAAAACCC-TTCAA
*
58739 T-TTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAAATTGAGAAAAAACTT
127 TCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC--AAAAAATTGAGGAAAAACTT
* *
58803 TTCGGGTAAGTTTTTGGAAAATTTTAGCCGAAATCGTGTACTAAACCCATCACCGTTTTTTGCTA
190 TTCGGGTAAGTTTTT--CAAATTTTAGCCGAAATCGTGTACT-AA-CCATCACCGTTTTTGGCTA
* * *
58868 AAAACGCGTTTCGGTCCGCTAGCTCAGTTTTGTATGATTTTTGGCAGAGACACTCCTTGAAATAT
251 AAAACGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATAT
58933 CAATATTCACCTAA
316 CAATATTCACCTAA
* * *
58947 CCAAATGTTAGCCATAACGGATTTAAGGATATT-TTTTTACAAGCATCTGAATCTTGTTTCGATT
1 CCAAATCTCAGCCATAACGGATTTAAGGAT-TTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* * * ** *
59011 TAATTAGAAATAAATTCGAAAAAAATGGAAAAACTTATATTATAAGCGTAAAAACAATTCAATTT
65 TAATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATCT
59076 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAGAAAAATTGAGGAAAAACTTTTCG
130 TTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCA-AAAAATTGAGGAAAAACTTTTCG
* *
59141 GGTAAGTTTTTGGAAAATTTTAGCCGAAATCGTGTACTAAACCATCACCGTTTTTTGCTAAAAAC
194 GGTAAGTTTTT--CAAATTTTAGCCGAAATCGTGTACT-AACCATCACCGTTTTTGGCTAAAAAC
* * *
59206 GCGTTTCGGTCCGCTAGCTCAGTTTTGTATGATTTTTGGCAGAGACACTCCTTGAAATATCAATA
256 GCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATA
59271 TTCACCTAA
321 TTCACCTAA
* * *
59280 CCGAAA-GTCAGCCATAACGGATTTCAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATT
1 CC-AAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
** * * * *
59344 TAATTAGAAATAAATTATAAAAAAAAGG-AAAAACGGTATTAGAAGCGTGTAAAACCCTTCAATC
65 TAATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAATC
* * * * * * * *
59408 TTTTTGGCTTTGAATTACATATTTTTTATGACTATTGTGGCAAAATATTGA-GAAAAATTTCTTC
129 TTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTT-TTC
* * *
59472 -GG--A-----TC--A-GTT--------T--T-TA-T-A-CATCACTGTTTTTGGTTAAAAACGC
193 GGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGC
* * * * * *
59512 GTTTCGGGACC-CCAGCTTAGGTTTGGATGATTTTTGGCAGAGAGACTCCTTAAAATATCTATAT
258 GTTTC-GGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATAT
*
59576 TTATCC-AA
322 TCA-CCTAA
* * * ** *
59584 CAAAATCCCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT-TGAATCTTGTTTCGATAT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* **
59648 AATAAGAAATAAATTCGAAAAAACATCGAAAAAAATTGAAAAAATGATATTATAATTGTGAAAAC
66 AATTAGAAATAAATTCGAAAAAA-AT-G---------GAAAAAATGATATTATAAGCGTGAAAAC
*
59713 CCTTCAAAT-TTTTTGGCGTTGAATTATATAATTTTTCTGAGTATTTTGGCAAAAAAATTGAGGA
120 CCTTC-AATCTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGC-AAAAAATTGAGGA
* * * * * **
59777 GAAACTTTT-GTGAAAGTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCATCGTTTGG
183 AAAACTTTTCGGGTAAGTTTTT-C-AAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTT
* * * * * *
59841 GGCTAAAAACGCGTTTCGGTGCGTCAGCTCAGTTTTGTATGATTTTTGGTAGTGAGAATCCTTGA
246 GGCTAAAAACGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGA
*
59906 AATATTAATATTCACCTAA
311 AATATCAATATTCACCTAA
* *
59925 CCAAATGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * * * * **
59990 AATTAAAAATAAATTTGAAAAAAAATTG-AAAAACGATATTAGAAGCGTGAAAAAACAATTCAAT
66 AATTAGAAATAAATTCG-AAAAAAATGGAAAAAATGATATTATAAGCGTG--AAAACCCTTCAAT
* * * ** * *
60054 CTTTTTGGTGTTGAATTATATATTTTTTATGACCATTGTGGCAAAATATTGAGGAAAAA--TTTC
128 CTTTTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTTTTC
* * * * *
60117 GGG---G----TCGATTTTTAGCCGAAATCGTGTAATAACCATC-CCAATTTTGGGCTAAAAACG
193 GGGTAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACC-GTTTTTGGCTAAAAACG
* * * * * * *
60174 CATTCCGG--AGACACGACTCAATTTTGCATGATTTTTGG-AGCAAAGAATCCTTGAAATATATC
257 CGTTTCGGTCCGCCA-G-CTCAGTTTTGCATGATTTTTGGCAG-AGAGACTCCTTG-AA-ATATC
* * * * *
60236 TAGATTAATCGAA
317 AATATTCACCTAA
* ** * * * * *
60249 -CAGAATCTCAGCCACATTGGATATAAGAATTTATTTTTACAAGCATCTGAATCTTATTTCGATT
1 CCA-AATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
** * * * * * *
60313 TTGTTAGAAATTAAA-TCAGAGAAAATATGGATAAACA--ATATTAGAAGCATGGAAAGCCTGTC
65 TAATTAGAAA-TAAATTC-GA-AAAAAATGGA-AAAAATGATATTATAAGCGTGAAAACCCT-TC
** * * ** * *
60375 AATCTTTTTAACGTTGAAATATTTTTTTTTTAC-GAATATTTT-GCAAAAAATTGAGAAAAAAAC
125 AATCTTTTTGGCGTTGAATTATATAGTTTTT-CTGAGTATTTTGGCAAAAAATTGAG-GAAAAAC
* *
60438 TTTTCGGGTTAG----T----TTTTAGCATGAAATCGTGTACTAACCATCACCGTTTTTGGCTAA
188 TTTTCGGGTAAGTTTTTCAAATTTTAGC-CGAAATCGTGTACTAACCATCACCGTTTTTGGCTAA
* * * * * * * * *
60495 AAACGTGTTTTGGTGCACCAGCTCAGTTTTGTATGATTTTTGGTAGTGAGACTTCTTGAAATATT
252 AAACGCGTTTCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATC
60560 AATATTCACCTAA
317 AATATTCACCTAA
* *
60573 CCAAATGTCAGCCATAACGGATTTAAGGATTTG-TTTTACGAGCATCTAAATCTTGTTTCGATTT
1 CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
*
60637 AATTAGAAATAAATTAGAAAAAAA
66 AATTAGAAATAAATTCGAAAAAAA
60661 AAATGGAAAA
Statistics
Matches: 5434, Mismatches: 819, Indels: 692
0.78 0.12 0.10
Matches are distributed among these distances:
303 39 0.01
304 113 0.02
305 8 0.00
306 4 0.00
307 1 0.00
308 42 0.01
309 61 0.01
310 24 0.00
311 45 0.01
312 88 0.02
313 149 0.03
314 221 0.04
315 192 0.04
316 121 0.02
317 144 0.03
318 28 0.01
319 158 0.03
320 207 0.04
321 281 0.05
322 211 0.04
323 305 0.06
324 182 0.03
325 56 0.01
326 170 0.03
327 32 0.01
328 8 0.00
329 168 0.03
330 126 0.02
331 465 0.09
332 375 0.07
333 565 0.10
334 96 0.02
335 148 0.03
336 16 0.00
337 2 0.00
338 2 0.00
339 1 0.00
340 7 0.00
341 123 0.02
342 342 0.06
343 76 0.01
344 32 0.01
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (329 bp):
CCAAATCTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
AATTAGAAATAAATTCGAAAAAAATGGAAAAAATGATATTATAAGCGTGAAAACCCTTCAATCTT
TTTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAATTGAGGAAAAACTTTTCGGG
TAAGTTTTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGCGTT
TCGGTCCGCCAGCTCAGTTTTGCATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCAC
CTAA
Found at i:58377 original size:11 final size:11
Alignment explanation
Indices: 58358--58396 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
58348 GATATAATTA
*
58358 GAAATAAAATC
1 GAAAAAAAATC
58369 GAAAAAAAATC
1 GAAAAAAAATC
58380 GAAAAAAAAT-
1 GAAAAAAAATC
58390 GAAAAAA
1 GAAAAAA
58397 TGATATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 7 0.26
11 20 0.74
ACGTcount: A:0.74, C:0.05, G:0.10, T:0.10
Consensus pattern (11 bp):
GAAAAAAAATC
Found at i:59725 original size:648 final size:645
Alignment explanation
Indices: 54924--60661 Score: 5320
Period size: 663 Copynumber: 8.8 Consensus size: 645
54914 AATCGTGTAC
* ** * * *
54924 TAACCATCACCGTTTTTGGCTAAAAACGCGTTTCGGTTCGCCAGCTCAGTTTTGAAGGATTTTTG
1 TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTTTTG
* * * * * ** * * **
54989 GCAGAGAGACTTCTTGAAATATCAATATTCA-CCTAACCAAATGTCAGTCATAACGGATTTAAGG
66 GCAGAGAGACTCCTTAAAATATCTATATTTATCC-AACAAAATCCCAGCCACATTGGATTTAAGG
* *
55053 ATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATG--
130 ATTTGTTTTTACGAGCAT-TGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAAAATGAA
*
55116 AAAAA-G-----ATGATATTATAATTGTGAAAACCCTTCACTTTTTTGGCGTTGAATTATATAGT
194 AAAAATGAAAAAATGATATTATAATTGTGAAAACCCTTCAATTTTTTGGCGTTGAATTATATAGT
* * * * *
55175 TATTCTGAGTATTGTGGCAAAACAATTGAGGAAAAACTTTTTGGGTAAGTTTTTGCAGAATTTTA
259 TTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAAATTTTA
* * * * *
55240 GACGAAATCGTGTACTAACAATCA-CGATATTTTGGCTAAAAAC-CCTTTCTGAAGTTCG--A-C
324 GCCGAAATCGTGTACTAACCATCACCG-T-TTTTTGCTAAAAACGCGTTTC-G--GTCCGCTAGC
* * * * * * *
55300 TCAATTTTGCATGATTTTTGGTGCA-A-AGACTCCTTGAAGTATCCATATTTATC-GACCAAAAT
384 TCAGTTTTGTATGATTTTT-G-GCAGAGAGACTCCTTGAAATATCAATATTCACCTAACC-AAAT
* * * * * * * *
55362 CTCAGCCGTATA-GGATATAAGGATTAGCTTTTACGATCATCTAAATATTGTTTCGATTTAATTA
446 GTCAGCCATA-ACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * *
55426 GAAATTAATT-TGAAAAAAATA-GAAAAACGATATTAAAAGCGTG-AAAACCCGTT-AATGTTTT
510 GAAATAAATTAT-AAAAAAA-AGGAAAAACGATATTAGAAGCGTGAAAAACCC-TTCAATCTTTT
* ** * * * * * * * *
55487 TGGCATAAAAATACATATTTTTTATGAATATTAT-GCAAAACATTAAGAAAAAACTT-TTCGGGT
572 TGGCTTTGAATTATATATTTTTTATGACTATTGTGGCAAAATATTGAG-AAAAATTTCTTCGGAT
55550 CAGTTTTTAGCCGAAATCGTGT
636 CAGTTTTT-------A-----T
* * * * * *
55572 ACTAATCATCACAGTTTTTGGCTAATAACGCG-TTCCGGAGCCCC-GACTCAATTTTGCATGATT
1 --TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGA-CCCCAG-CTCAGTTTTGGATGATT
* * * * * * *
55635 TTTGGTGCA-A-AGACTCCTTGAAATGTATCTAGATTAATCGAACAGAATCTCAGTCACATTGGA
62 TTT-G-GCAGAGAGACTCCTT-AAA-ATATCTATATTTATCCAACAAAATCCCAGCCACATTGGA
* ** * * * * * * * *
55698 TATAACAATTTGCTTTTACGAGCATCTGAATGTTATTTCAATTTAGTTAGAAATTAATTCGGAAA
123 TTTAAGGATTTGTTTTTACGAGCAT-TGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAA
* * ** * * ** *
55763 AAAT-------ATGGATAAACAATATTAGAAGCATG-GAACGCCTTTCAATATTTTTGGCGTTGA
187 AAATGAAAAAAATGAAAAAATGATATTATAA--TTGTGAAAACCCTTCAAT-TTTTTGGCGTTGA
* * * * ** *
55820 AATATATA-TTTTTCCGAATATTTT-GCAAAAAACTTCAGAAAAAAAACTTTTCGGGTTAG----
249 ATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAATT--GAGGAAAAACTTTTCGGGTAAGTTTT
* ** * *
55879 T-C-----TTTAGCCGAAATCATGTACTAACCATCACCGTTTTAGGCTAAAAACGCGTTTCGATG
312 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTC
* * * * *
55938 CGCCAGCTCAGATTTGGATGATATTTGGCAGAGAGACT-CTTGAAATATCAATATTCACCGAACC
377 CGCTAGCTCAGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACC
*
56002 AAATGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCTTCTGAATCTTGTTTCGATTTAA
442 AAATGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA
* *
56067 TTAGAAATAAATTA-GAAAAAAA-G----ATGATATTAGAAGCGTGAAAAACCCTTCAATCTTTT
507 TTAGAAATAAATTATAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTT
* * * * *
56126 TGGCGTTGAATTATATATTTTTTATGACTATTGCGGCAAAATATTGAGAAAAAATTCTTTGGGTC
572 TGGCTTTGAATTATATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATC
56191 AGTTTTTAGCCGAAATCGTGT
637 AGTTTTT-------A-----T
* *
56212 ACTAACCATCACGGTTTTTGGCTAAAACCGCGTTTCGGGACCCCAGCTCAATTTTGGATGATTTT
1 --TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTTT
*
56277 TGGCAGAGAGACT-CTTAAAAATATCTATATTTATCCAACAAAATCCCAGGCACATTGGATTTAA
64 TGGCAGAGAGACTCCTT-AAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAA
* * *
56341 GGGTTTGTTTTTACGAGTATTGAATTTTGTTTCGATATAATTAGAAATAAATTCG-AAAAAATG-
128 GGATTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAAAATGA
** *
56404 -------GAAAAAATGATATTATAAGCGTGAAAACCCTTCAATTTTTTTGGCGTTGAATTACATA
193 AAAAAATGAAAAAATGATATTATAATTGTGAAAACCCTTCAA-TTTTTTGGCGTTGAATTATATA
* * *
56462 GTTTTTCTGAGTATTGTGGCAAAAAAATTGAGGAGAAACTTTTCGGGCAAGTTTTTGCAAAA-TT
257 GTTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAAATTT
** * *
56526 TAGCCGAAATCGTGTACTAACCATCACCG-TTTTTGACTAAAAACGCGTTTCGGTGAGCCAACTC
322 TAGCCGAAATCGTGTACTAACCATCACCGTTTTTTG-CTAAAAACGCGTTTCGGTCCGCTAGCTC
* * *
56590 AATTTTGTATGATTTTTGGCAGAGAGACTACTTGAAATATCAATATTCACCTAACCGAATGTCAG
386 AGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAATGTCAG
*
56655 CCATAACGGATTTAAGGATTCGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
451 CCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
*
56720 AATTATAAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGATTTG
516 AATTAT-AAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCTTTG
* * * *
56785 AATTATATACTTTTTATAAATATTGCGGCAAAATATTGAGAAAAATTTCTTCGGATCAGTTTTTA
580 AATTATATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATCAGTTTTTA
*
56850 GCC
645 --T
* * * **
56853 GAATTCGTGTACGTCACGGTTTTTGGGTAAAAACGCGTTTCGGGATACCAGCTCAGTTTTGGATG
1 TAA--C-----CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATG
*
56918 ATTTTTGGCAGAGAGACTCCTTAAAATATCTATATATATCCAACAAAATCCCAGCCACATTGGAT
59 ATTTTTGGCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGAT
** *
56983 TTAAGGATTTGTTTTTGTGAGCATTTAATCTTGTTTCGATATAATTAGAAATAAATTC-------
124 TTAAGGATTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAAA
* *
57041 --GAAAAAAATGAAAAAATGATATTATAATTGTGAAAACCCTTTAAATTTTTTGGCTTTGAATTA
189 ATGAAAAAAATGAAAAAATGATATTATAATTGTGAAAACCC-TTCAATTTTTTGGCGTTGAATTA
*
57104 TATAGTTTTTCTGAGTATTTTGGCAAAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGGA
253 TATAGTTTTTCTGAGTATTTTGGC--AAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCA
* *
57169 AAATTTTAGCCAAAATCTTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCT
316 AAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCT
* *
57234 AGCTCAGTTTTGCATGATTTTTGGCAGAGACACTCCTTGAAATATCAATATTCACCTAACCAAAT
381 AGCTCAGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAAT
* *
57299 GTCAGCCATAACAGATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAG
446 GTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * *
57364 AAATAAATT-TGAAAAAAATCGGAAAAAATGATATTATAAGCGTG-AAAACCCTTCAAAT-TTTT
511 AAATAAATTAT-AAAAAAA-AGG-AAAAACGATATTAGAAGCGTGAAAAACCCTTC-AATCTTTT
* * * * * * *
57426 TGGCGTTGAATTATATAGTTTTTATGAGTATTTTGGCAGAAAAATTGAGGAGAAACTT-TTCGGG
572 TGGCTTTGAATTATATATTTTTTATGACTATTGTGGCA-AAATATTGA-GAAAAATTTCTTC-GG
* *
57490 TAAGTTTTTGCAAAAATTTAGACGAAATCGTGTAC
634 --A-----T-C----AGTT--------T--T-TAT
* *
57525 TAACCATCACGGTTTTTGGCTAAAAACGCATTTCGGAACCCCAGCTCAGTTTTGGATGATTTTTG
1 TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTTTTG
* * * *
57590 GCAAAGAGACACCTTATAATATCTATATTTATCCAACAAAATCCCAGCCAAATTGGATTTAAGGA
66 GCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAAGGA
* *
57655 TTTGTTTTTACGAGCATTTAATCTTGTTTCGATATAATTAGATATAAATTCGAAAAAAAATCGAA
131 TTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCG-AAAAAAAT-GAA
*
57720 AAAAATTGAAAAAATGATATTATAATTGTGAAAACCCTTTAAATTTTTTGGCGTTGAATTATATA
194 AAAAA-TGAAAAAATGATATTATAATTGTGAAAACCC-TTCAATTTTTTGGCGTTGAATTATATA
* **
57785 GTTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACCTTTCGGGTAAGTTTTTTAAAAATTT
257 GTTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAAATTT
* * * *
57850 CAGCCGAAATCGTGTATTAACCATCACCGTTTTTTGCTAAATACGTGTTTCGGTCCGCTAGCTCA
322 TAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCTAGCTCA
* * * * * *
57915 GTTATGCATGATTTTAGGCAGATACACTCCTTCAAATATCAATATTCACCTAACCAAATGTCAGC
387 GTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAATGTCAGC
57980 CATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAA
452 CATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAA
58045 ATTAT-AAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCTTTGAA
517 ATTATAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCTTTGAA
* *
58109 TTATATATTTCTTATGACTATTGCGGCAAAATATTGAGAAAAATTTCTTCGGATCAGTTTTTAGC
582 TTATATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATCAGTTTTT---
58174 CGAAATCGTGT
644 ----A-----T
* * *
58185 ACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTTCGGGACACCAACTCAGTTTTGGATGATTT
1 --TAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTT
* * *
58250 TTGGCAGAGAGACTCCTTAAAATATCTAAATATATCCAACAAAATCCCAGCCACATTGGATTCAA
63 TTGGCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAA
** * *
58315 GGATTTGTTTTTGTGAGCATTTAATCTTGTTTCGATATAATTAGAAATAAAATCGAAAAAAAATC
128 GGATTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCG-AAAAAAAT-
* * *
58380 GAAAAAAAATGAAAAAATGATATTATAATTGTGCAAACCCTTTAAATTTTTTGGCTTTGAATTAT
191 G-AAAAAAATGAAAAAATGATATTATAATTGTGAAAACCC-TTCAATTTTTTGGCGTTGAATTAT
*
58445 ATAGTTTTTCTGAGTATTTTGGCAAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGGAAA
254 ATAGTTTTTCTGAGTATTTTGGC-AAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAA
* *
58510 ATTTTAGCCAAAATCTTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGGATCC-C-
318 ATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTC-GG-TCCGCT
* * * * * * **
58573 AGCTCA-TTTTGGATGATTTTTGGTAGAGAGACTCCTTCAAATATCTATATTTATCTAAAAAAAT
381 AGCTCAGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAAT
** * * *
58637 CCCAGCCACATTC-AATTTAAGGATTTG-TTTT-----CA-C-G-A----G---C-ATTTAA-T-
446 GTCAGCCATA-ACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
** * * ** *
58682 -AAATAAATT-TGAAAAAAAATTAAAATAATGATATTATAATTGTG-AAAACCCTTTAAAT-TTT
510 GAAATAAATTAT-AAAAAAAA-GGAAA-AACGATATTAGAAGCGTGAAAAACCC-TTCAATCTTT
* * * * * * *
58743 TTGGCGTTGAATTATATAGTTTTTCTGAGTATTTTGGCAAAAAAAATTGAGAAAAAACTT-TTCG
571 TTGGCTTTGAATTATATATTTTTTATGACTATTGTGGC--AAAATATTGAG-AAAAATTTCTTCG
* *
58807 GGTAAGTTTTTGGAAAATTTTAGCCGAAATCGTGT
633 GATCAG----T------TTTT-------A-----T
* * * * *
58842 ACTAAACCCATCACCGTTTTTTGCTAAAAACGCGTTTC-GGTCCGCTAGCTCAGTTTTGTATGAT
1 --T-AA-CCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACC-CCAGCTCAGTTTTGGATGAT
* * * * * *** * **
58906 TTTTGGCAGAGACACTCCTTGAAATATCAATATTCA-CCTAACCAAATGTTAGCCATAACGGATT
61 TTTTGGCAGAGAGACTCCTTAAAATATCTATATTTATCC-AACAAAATCCCAGCCACATTGGATT
* *
58970 TAAGGATATT-TTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
125 TAAGGAT-TTGTTTTTACGAGCAT-TGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAA
* * ** * **
59034 AATG--------GAAAAACTTATATTATAAGCGTAAAAACAATTCAATTTTTTTGGCGTTGAATT
188 AATGAAAAAAATGAAAAAATGATATTATAATTGTGAAAACCCTTCAA-TTTTTTGGCGTTGAATT
* *
59091 ATATAGTTTTTCTGAGTATTTTGGCAGAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGGAA
252 ATATAGTTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAA
59156 AATTTTAGCCGAAATCGTGTACTAAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCT
317 AATTTTAGCCGAAATCGTGTACT-AACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCT
*
59221 AGCTCAGTTTTGTATGATTTTTGGCAGAGACACTCCTTGAAATATCAATATTCACCTAACCGAAA
381 AGCTCAGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACC-AAA
* *
59286 -GTCAGCCATAACGGATTTCAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTA
445 TGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* *
59350 GAAATAAATTATAAAAAAAAGGAAAAACGGTATTAGAAGCGTGTAAAACCCTTCAATCTTTTTGG
510 GAAATAAATTATAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGG
*
59415 CTTTGAATTACATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATCAGT
575 CTTTGAATTATATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATCAGT
59480 TTTTA-
640 TTTTAT
* * * *
59485 T-A-CATCACTGTTTTTGGTTAAAAACGCGTTTCGGGACCCCAGCTTAGGTTTGGATGATTTTTG
1 TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTTTTG
59548 GCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAAGGA
66 GCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAAGGA
*
59613 TTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATAAGAAATAAATTCGAAAAAACATCGAA
131 TTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAAA-AT-GAA
59678 AAAAATTGAAAAAATGATATTATAATTGTGAAAACCCTTCAAATTTTTTGGCGTTGAATTATATA
194 AAAAA-TGAAAAAATGATATTATAATTGTGAAAACCCTTC-AATTTTTTGGCGTTGAATTATATA
* * * *
59743 ATTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAGAAACTTTT-GTGAAAGTTTTTGCAAAATTT
257 GTTTTTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAAATTT
* * *** *
59807 TAGCTGAAATCGTGTACTAACCATCATCGTTTGGGGCTAAAAACGCGTTTCGGTGCG-TCAGCTC
322 TAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCT-AGCTC
* * * *
59871 AGTTTTGTATGATTTTTGGTAGTGAGAATCCTTGAAATATTAATATTCACCTAACCAAATGTCAG
386 AGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAATGTCAG
* *
59936 CCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAAAAATA
451 CCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
* **
60001 AATT-TGAAAAAAAATTGAAAAACGATATTAGAAGCGTGAAAAAACAATTCAATCTTTTTGG-TG
516 AATTAT-AAAAAAAA-GGAAAAACGATATTAGAAGCGTG-AAAAACCCTTCAATCTTTTTGGCT-
* *
60064 TTGAATTATATATTTTTTATGACCATTGTGGCAAAATATTGAGGAAAAATTTCGGGGTC-GATTT
577 TTGAATTATATATTTTTTATGACTATTGTGGCAAAATATTGA-GAAAAATTTC---TTCGGA---
* * * *
60128 TTAGCCGAAATCGTGTAA
635 -T---C--AGT-TTTTAT
* ** * * * * * * *
60146 TAACCATCCCAATTTTGGGCTAAAAACGCATTCCGGAGACACGA-CTCAATTTTGCATGATTTTT
1 TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG-GACCCCAGCTCAGTTTTGGATGATTTTT
* * * * * * * *
60210 GG-AGCAAAGAATCCTTGAAATATATCTAGATTAATCGAACAGAATCTCAGCCACATTGGATATA
65 GGCAG-AGAGACTCCTT-AAA-ATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTA
* * * * * ** *
60274 AGAATTTATTTTTACAAGCATCTGAATCTTATTTCGATTTTGTTAGAAATTAAA-TC-----AGA
127 AGGATTTGTTTTTACGAGCAT-TGAATCTTGTTTCGATATAATTAGAAA-TAAATTCGAAAAAAA
* * * ** * *** * * ** *
60333 -G-AAAATATGGATAAACAATATTAGAAGCATGGAAAGCCTGTCAATCTTTTTAACGTTGAAATA
190 TGAAAAAAATGAAAAAATGATATTATAATTGTGAAAACCCT-TCAAT-TTTTTGGCGTTGAATTA
* ** * * *
60396 TTTTTTTTTTAC-GAATATTTT-GC-AAAAAATTGAGAAAAAAACTTTTCGGGTTAGTTTTTAGC
253 TATAGTTTTT-CTGAGTATTTTGGCAAAAAAATTGAG-GAAAAACTTTTCGGGTAAGTTTTT-GC
* * * * *
60458 ---A---T----GAAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAACGTGTTTTGGTGCAC
315 AAAATTTTAGCCGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGC
* * * * *
60513 CAGCTCAGTTTTGTATGATTTTTGGTAGTGAGACTTCTTGAAATATTAATATTCACCTAACCAAA
380 TAGCTCAGTTTTGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAA
*
60578 TGTCAGCCATAACGGATTTAAGGATTTG-TTTTACGAGCATCTAAATCTTGTTTCGATTTAATTA
445 TGTCAGCCATAACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
*
60642 GAAATAAATTAGAAAAAAAA
510 GAAATAAATTATAAAAAAAA
60662 AATGGAAAAA
Statistics
Matches: 4307, Mismatches: 529, Indels: 507
0.81 0.10 0.09
Matches are distributed among these distances:
633 1 0.00
634 46 0.01
635 27 0.01
636 58 0.01
637 143 0.03
638 80 0.02
639 59 0.01
640 95 0.02
641 9 0.00
642 10 0.00
643 99 0.02
644 214 0.05
645 268 0.06
646 320 0.07
647 293 0.07
648 307 0.07
649 297 0.07
650 105 0.02
651 117 0.03
652 89 0.02
653 20 0.00
654 24 0.01
655 56 0.01
656 42 0.01
657 76 0.02
658 118 0.03
659 47 0.01
660 4 0.00
661 2 0.00
662 20 0.00
663 366 0.08
664 110 0.03
665 228 0.05
666 51 0.01
667 23 0.01
668 45 0.01
669 18 0.00
670 2 0.00
671 10 0.00
672 36 0.01
673 49 0.01
674 8 0.00
675 228 0.05
676 9 0.00
677 78 0.02
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (645 bp):
TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCCAGCTCAGTTTTGGATGATTTTTG
GCAGAGAGACTCCTTAAAATATCTATATTTATCCAACAAAATCCCAGCCACATTGGATTTAAGGA
TTTGTTTTTACGAGCATTGAATCTTGTTTCGATATAATTAGAAATAAATTCGAAAAAAATGAAAA
AAATGAAAAAATGATATTATAATTGTGAAAACCCTTCAATTTTTTGGCGTTGAATTATATAGTTT
TTCTGAGTATTTTGGCAAAAAAATTGAGGAAAAACTTTTCGGGTAAGTTTTTGCAAAATTTTAGC
CGAAATCGTGTACTAACCATCACCGTTTTTTGCTAAAAACGCGTTTCGGTCCGCTAGCTCAGTTT
TGTATGATTTTTGGCAGAGAGACTCCTTGAAATATCAATATTCACCTAACCAAATGTCAGCCATA
ACGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTA
TAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCTTTGAATTAT
ATATTTTTTATGACTATTGTGGCAAAATATTGAGAAAAATTTCTTCGGATCAGTTTTTAT
Done.