Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012159.1 Corchorus olitorius cultivar O-4 contig12192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52249

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--3508
154
22.8
154
91
2
5422
41
18
18
22
1.91
4894--5282
199
2.0
199
95
1
708
35
14
13
37
1.85
9877--9951
27
2.7
27
89
2
114
38
32
12
17
1.86
17977--18018
21
2.0
21
90
0
66
33
26
21
19
1.97
21947--22066
57
2.1
57
85
0
159
40
20
10
29
1.84
22018--22108
41
2.2
42
80
7
98
37
19
13
29
1.90
34480--34522
20
2.2
20
100
0
86
25
18
37
18
1.94
34984--35014
4
7.8
4
92
0
53
70
0
3
25
1.02
35732--36129
220
1.8
218
90
2
636
21
23
12
42
1.87
36752--36786
13
2.9
12
88
12
54
31
2
0
65
1.07
43294--43346
22
2.4
22
93
0
88
3
24
47
24
1.68
43502--43578
40
1.9
40
97
0
145
7
35
24
32
1.84
45305--45344
2
19.0
2
90
10
62
47
0
5
47
1.24

Tables:   1

The End!