Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012160.1 Corchorus olitorius cultivar O-4 contig12193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22739

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2443--2474
16
1.9
17
93
6
57
81
0
9
9
0.88
2685--2714
12
2.4
13
88
11
53
66
13
6
13
1.43
5215--5263
21
2.3
21
86
6
64
14
28
14
42
1.84
6395--6436
6
7.3
6
84
10
61
83
0
2
14
0.75
6403--6449
16
2.9
16
90
0
67
80
2
6
10
0.96
6392--6451
22
2.7
22
80
10
77
78
3
8
10
1.07
8023--8067
21
2.1
21
87
0
63
17
20
28
33
1.95
14794--14832
2
19.5
2
100
0
78
51
0
0
48
1.00
16680--16717
18
2.1
18
95
0
67
13
34
10
42
1.78
18234--18278
21
2.1
21
87
0
63
22
6
15
55
1.63
21491--21552
27
2.2
29
85
8
83
38
6
9
45
1.63

Tables:   1

The End!