Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012166.1 Corchorus olitorius cultivar O-4 contig12199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1896
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34


Found at i:1096 original size:57 final size:57

Alignment explanation


    Indices: 1001--1116  Score: 214
    Period size: 57  Copynumber: 2.0  Consensus size: 57

        991 TATCTGTTTC

                                             *                       
       1001 CTTTCACACAATAAATGTTATAATAAATCATATTCCCCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAATAAATCATATCCCCCCTATCTCTACTTAATTATT

                                         *                           
       1058 CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAATAAATCATATCCCCCCTATCTCTACTTAATTATT

              
       1115 CT
          1 CT

       1117 ACAAAATAAA


Statistics
Matches: 57,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  57   57  1.00

ACGTcount: A:0.34, C:0.25, G:0.02, T:0.40


Consensus pattern (57 bp):   
CTTTCACACAATAAATGTTATAATAAATCATATCCCCCCTATCTCTACTTAATTATT
Done.