Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012170.1 Corchorus olitorius cultivar O-4 contig12203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44877

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1377--1419
21
2.1
21
86
4
61
27
20
18
32
1.96
4484--4518
11
3.1
11
95
4
61
17
34
31
17
1.93
6531--6689
31
5.1
31
89
0
192
33
26
24
15
1.95
7729--7791
24
2.4
27
87
7
87
39
49
1
9
1.45
10394--10429
19
1.9
18
88
5
54
41
8
22
27
1.82
17234--17269
19
1.9
18
88
5
54
41
8
22
27
1.82
20752--20810
30
2.0
30
86
6
84
37
3
22
37
1.71
27429--27519
32
2.8
32
93
0
155
19
41
24
14
1.88
27508--27547
22
1.9
22
85
10
57
25
35
30
10
1.88
35432--35500
34
2.0
34
94
0
120
14
33
14
37
1.87
35595--35644
25
2.0
25
88
7
75
42
0
2
56
1.11
37446--37530
32
2.7
32
87
3
109
8
16
37
37
1.79
37481--37534
16
3.4
16
71
19
58
9
16
35
38
1.81
37702--37753
13
3.6
14
76
19
61
55
3
0
40
1.18
37699--37752
11
4.7
12
76
15
51
55
3
0
40
1.17
38004--38075
31
2.3
31
75
17
78
61
8
4
26
1.43
43917--44057
72
2.0
72
100
0
282
27
11
12
48
1.76

Tables:   1

The End!