Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012171.1 Corchorus olitorius cultivar O-4 contig12204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3565
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:1333 original size:31 final size:30

Alignment explanation


    Indices: 1260--1333  Score: 130
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       1250 TTTGGCGCCG

                 *                        
       1260 TTGCCCGGGAAGGGTAACTTTTTCTGGTAT
          1 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT

                                          
       1290 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
          1 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT

                          
       1320 TTGCCAGGGGAAGG
          1 TTGCC-GGGGAAGG

       1334 AAAAATAGAC


Statistics
Matches: 42,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
  30   34  0.81
  31    8  0.19

ACGTcount: A:0.18, C:0.15, G:0.35, T:0.32


Consensus pattern (30 bp):   
TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
Done.