Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012172.1 Corchorus olitorius cultivar O-4 contig12205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8198

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2914--2980
26
2.5
27
90
2
100
34
7
17
40
1.78
3019--3152
14
9.6
14
91
0
169
20
1
22
55
1.52
2957--3038
43
1.9
43
84
0
110
34
6
21
37
1.79
3010--3152
21
6.8
21
88
0
178
21
1
22
54
1.52
3039--3149
7
15.9
7
98
0
177
18
0
23
57
1.40
3306--3383
33
2.4
33
91
0
120
32
6
17
43
1.75
3421--3752
54
6.0
55
80
9
183
34
21
15
27
1.94
3487--3753
54
4.8
54
84
6
320
35
22
14
26
1.93
3487--3753
114
2.4
108
86
5
365
35
22
14
26
1.93
3832--4349
37
13.9
37
77
6
492
42
13
18
24
1.87
3836--4380
74
7.3
74
88
2
788
42
13
18
24
1.87
3832--4380
223
2.5
223
90
1
825
42
13
19
24
1.87
5164--5326
87
1.9
87
86
0
236
27
23
11
37
1.89
5459--5536
4
19.8
4
70
12
54
2
19
1
76
0.96
5458--5536
30
2.6
30
80
11
90
2
18
1
77
0.96
5473--5532
22
2.7
22
78
2
66
1
20
1
76
0.96
6171--6234
14
4.7
13
87
12
85
37
10
9
42
1.73

Tables:   1

The End!