Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012175.1 Corchorus olitorius cultivar O-4 contig12208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38985

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8190--8252
30
2.1
30
94
5
110
19
34
17
28
1.94
9777--9804
3
9.3
3
100
0
56
0
0
64
35
0.94
15220--15265
22
2.1
22
88
8
67
30
21
23
23
1.99
19001--19047
20
2.4
18
83
13
58
19
8
6
65
1.41
19416--19446
14
2.2
14
100
0
62
22
0
22
54
1.44
20121--20194
35
2.1
35
92
0
121
16
9
28
45
1.78
20203--20360
24
5.8
26
70
27
107
31
13
21
34
1.92
20173--20392
32
7.6
32
65
29
100
29
13
22
34
1.92
20177--20406
56
4.1
56
93
2
372
29
13
23
34
1.92
20375--21001
318
2.0
317
95
0
1119
29
14
21
34
1.93
26704--26789
24
3.2
24
71
22
82
30
11
25
32
1.91
26674--26897
56
4.0
56
89
0
340
27
13
23
34
1.93
26724--26883
32
5.5
32
66
24
102
28
12
23
35
1.91
38682--38828
72
2.0
72
97
0
276
39
7
4
48
1.53

Tables:   1

The End!