Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012183.1 Corchorus olitorius cultivar O-4 contig12216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1804
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Found at i:300 original size:154 final size:153
Alignment explanation
Indices: 1--1804 Score: 2591
Period size: 154 Copynumber: 11.7 Consensus size: 153
1 AACCTCAATGC-TTTCTTATTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
1 AACCTCAATGCTTTTC-T-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
* * * * * **
65 CACTGTGAAGTTTTTATCTCATTTGGAACACTTATTATTTTGAGACTATTGGGGCCCATTAGTGA
64 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC
* * *
130 AGTTTTGAATCATCTTCGCTTTGGC
129 CGTTTTGAATCGTCTTCGATTTGGC
*
155 AACCGTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 AACC-TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * * * *
220 ACTGTGAAGTTTTTATCTCATTTGCAACACAAT-TTATTTTGGGCCTATCTGGGTCCATTAGTTC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACAC-TTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC
*
284 CGTTTTGAATCGTCTTCGATTAGGC
129 CGTTTTGAATCGTCTTCGATTTGGC
*
309 AAACCTCAATGCTTTTCTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 -AACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * * * * ***
374 ACTGTGAAGTTCTTATCTCATTTGGAACACTTATTATTTTGAGCCTATTGGGGCCCA-T-GTGAA
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
*
437 GTTTTGAATCGTCTTCGCTTTGGC
130 GTTTTGAATCGTCTTCGATTTGGC
* *
461 AACCGTCAATGCCTTTCTTTCCATTATTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 AACC-TCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* *
526 ACTGTGAAGTTTTTATCTCATTTGCAACACATT-TTATTTTGGGCCTATCGGGGCCCATTAGTTC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACAC-TTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC
*
590 CGTTTTGATTCGTCTTCGATTTGGC
129 CGTTTTGAATCGTCTTCGATTTGGC
*
615 AACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCC
1 AA-CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * * **
680 ATTGTGAAGTTTTTAGCTCATTTGGAATAGATT-TTATTTTGGGCCTATCTAGGCCCATTAGTTC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACA-CTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC
* * *
744 CGTTTTGAATCGTATTCGATTAGAC
129 CGTTTTGAATCGTCTTCGATTTGGC
*
769 AAACACTCAATGCTTTTCTCTT-CATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGT
1 -AAC-CTCAATGCTTTTCT-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT
* * *
833 CCACTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGTCCATTAGTG
63 CCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTT
* *
898 ACGTTTTGAATCGTCTTCGCTTTGGC
128 CCGTTTTGAATCGTCTTCGATTTGGC
*
924 AACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 AA-CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* *
989 ACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTTGGCCTATCGGGGCCCATTAGTTCC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
*
1054 GTTTTGAATCCTCTTCGATTTGGC
130 GTTTTGAATCGTCTTCGATTTGGC
* * **
1078 AACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATTAGAAC
1 AA-CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * ** **
1143 ATTGTGAAG-TTTTAGCTCATTTGGAACACTTGTTATTTTGGGTCTATCAAGGCCCATTAGTGAC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
*
1207 GTTTTGAATCGTCATT-GATTTGCC
130 GTTTTGAATCGTC-TTCGATTTGGC
* * **
1231 AACCCTCAATGCTTTTCTTTCCATTGTTTATGACCTAACTATAATCATTTCGGTGAGATTAGAAC
1 AA-CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* *
1296 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGAGGCCCATTAGTTCC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
* *
1361 GTTTTAAATCGTCTTTGATTTGGC
130 GTTTTGAATCGTCTTCGATTTGGC
*
1385 AACCCTCAATGCTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 AA-CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
* * **
1450 ACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTGGACCTATCAAGGCCCATTAGTTCC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
*
1515 GTTTTGAATCGTCTTCGATTAGGC
130 GTTTTGAATCGTCTTCGATTTGGC
*
1539 AAACCTCAATGCTTTTCTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 -AACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
** * **
1604 ACTGTGAAGTTTTTAGCTCATTTTCAACACTCGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC
1669 GTTTTGAATCGTCTTCGATTTGGC
130 GTTTTGAATCGTCTTCGATTTGGC
* * *
1693 AACACTCAATGCCTTTCTTTCGATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCA
1 AAC-CTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
**
1758 ACTGTGAAGTTTTTAGCTCATTTTCAACACTTGTTATTTTGGGCCTA
65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTA
Statistics
Matches: 1496, Mismatches: 132, Indels: 44
0.89 0.08 0.03
Matches are distributed among these distances:
151 4 0.00
152 131 0.09
153 150 0.10
154 1056 0.71
155 149 0.10
156 6 0.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (153 bp):
AACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCG
TTTTGAATCGTCTTCGATTTGGC
Found at i:1395 original size:615 final size:611
Alignment explanation
Indices: 3--1804 Score: 2661
Period size: 615 Copynumber: 2.9 Consensus size: 611
1 AA
3 CCTCAATGC-TTTCTTATTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 CCTCAATGCTTTTC-T-TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
* * * * ***
67 CTGTGAAGTTTTTATCTCATTTGGAACACTTATTATTTTGAG-ACTATTGGGGCCCATTAGTGAA
64 CTGTGAAGTTTTTAGCTCATTTGGAACACTT-TTATTTTGGGCA-TATCGAGGCCCATTAGTTCC
* * * *
131 GTTTTGAATCATCTTCGCTTTGGCAACCGTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTA
127 GTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT-CATTGTTTATGGCCTAACTA
*
196 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTATCTCATTTGCAACACAAT-TTATTTT
191 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG-AACAC-ATGTTATTTT
*
260 GGGCCTATCTGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTT
254 GGGCCTATCAGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTT
* *
325 CTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTAT
319 CTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG
* * *
390 CTCATTTGGAACACTTATTA-TTTTGAGCCTATTGGGGCCCA-T-GTGAAGTTTTGAATCGTCTT
384 CTCATTTGGAACAC-TGTTATTTTTG-GCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
* * *
452 CGCTTTGGCAACCGTCAATGCCTTTCTTTCCATTATTTATGGCCTAACTATAATCATTTTGGTGA
447 CGATTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
** * **
517 GATTAGTCCACTGTGAAGTTTTTATCTCATTTGCAACACATT-TTATTTTGGGCCTATCGGGGCC
512 GATTAGAACA-TGTGAAGTTTTTAGCTCATTTGCAACAC-TTGTTATTTTGGGCCTATCAAGGCC
** * *
581 CATTAGTTCCGTTTTGATTCGTCTTCGATTTGGCAAC
575 CATTAGTGACGTTTTGAATCGTCTTCGATTTGCCAAC
* *
618 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCATT
1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
* * * *
683 GTGAAGTTTTTAGCTCATTTGGAATAGATTTTATTTTGGGCCTATCTAGGCCCATTAGTTCCGTT
66 GTGAAGTTTTTAGCTCATTTGGAACA-CTTTTATTTTGGGCATATCGAGGCCCATTAGTTCCGTT
* * * * *
748 TTGAATCGTATTCGATTAGACAAACACTCAATGCTTTTCTCTTCATTGTTTATAGCCTAACTATA
130 TTGAATCGTCTTCGATTTGGC-AACCCTCAATGCTTTTCT-TTCATTGTTTATGGCCTAACTATA
*
813 ATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGG
193 ATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT-GAACACATGTTATTTTGGG
* ** * * * * *
878 CCTATCGGGGTCCATTAGTGACGTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTT
257 CCTATCAGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTTCTA
943 TCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
322 TCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
** *
1008 ATTTGGAACACATGTTATTTTTGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCCTCTTCGAT
387 ATTTGGAACAC-TGTTATTTTTGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* * *
1073 TTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATT
451 TTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
* *
1138 AGAACATTGTGAAG-TTTTAGCTCATTTGGAACACTTGTTATTTTGGGTCTATCAAGGCCCATTA
516 AGAACA-TGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTATCAAGGCCCATTA
1202 GTGACGTTTTGAATCGTCATT-GATTTGCCAAC
580 GTGACGTTTTGAATCGTC-TTCGATTTGCCAAC
* * **
1234 CCTCAATGCTTTTCTTTCCATTGTTTATGACCTAACTATAATCATTTCGGTGAGATTAGAACACT
1 CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
1299 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGAGGCCCATTAGTTCCGTT
66 GTGAAGTTTTTAGCTCATTTGGAACACTT-TTATTTTGGGCATATCGAGGCCCATTAGTTCCGTT
* *
1364 TTAAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTTCAATTGTTTATGGCCTAACTATAA
130 TTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTC-ATTGTTTATGGCCTAACTATAA
*
1429 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTGGAC
194 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT-GAACACATGTTATTTTGGGC
* *
1494 CTATCAAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTTCTAT
258 CTATCAGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTTCTAT
1559 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
323 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
** *
1624 TTTTCAACACTCGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
388 TTTGGAACACT-GTTATTTTTGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
* *
1689 TGGCAACACTCAATGCCTTTCTTTCGATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
452 TGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
*
1754 GTCAAC-TGTGAAGTTTTTAGCTCATTTTCAACACTTGTTATTTTGGGCCTA
517 G--AACATGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTA
Statistics
Matches: 1066, Mismatches: 103, Indels: 35
0.89 0.09 0.03
Matches are distributed among these distances:
614 119 0.11
615 605 0.57
616 247 0.23
617 95 0.09
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (611 bp):
CCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
GTGAAGTTTTTAGCTCATTTGGAACACTTTTATTTTGGGCATATCGAGGCCCATTAGTTCCGTTT
TGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCATTGTTTATGGCCTAACTATAATC
ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGAACACATGTTATTTTGGGCCTA
TCAGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTTTCTATCCA
TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
GGAACACTGTTATTTTTGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC
AACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGAAC
ATGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTATCAAGGCCCATTAGTGACG
TTTTGAATCGTCTTCGATTTGCCAAC
Found at i:1549 original size:769 final size:768
Alignment explanation
Indices: 1--1804 Score: 2873
Period size: 769 Copynumber: 2.3 Consensus size: 768
1 AACCTCAATGC-TTTCTTATTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
1 AACCTCAATGCTTTTC-TATT-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
* * * * * *
65 CACTGTGAAGTTTTTATCTCATTTGGAACACTTATTATTTTGAGACTATTGGGGCCCATTAGTGA
64 CACTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGA
* * *
130 AGTTTTGAATCATCTTCGCTTTGGCAACCGTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACT
129 CGTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACT
*
195 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTATCTCATTTGCAACACAAT-TTATTT
194 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACAC-ATGTTATTT
* * *
259 TGGGCCTATCTGGGTCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCAAACCTCAATGCTTT
258 TGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCCTCTTCGATTAGGCAAACCTCAATGCTTT
* * **
324 TCTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTCTTA
323 TCTATCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATTAGAACACTGTGAAGTTCTTA
* ***
389 TCTCATTTGGAACACTTATTATTTTGAGCCTATTGGGGCCCATGTGAAGTTTTGAATCGTCTTCG
388 GCTCATTTGGAACACTTATTATTTTGAGCCTATCAAGGCCCATGTGAAGTTTTGAATCGTCTTCG
* * * * *
454 CTTTGGCAACCGTCAATGCCTTTCTTTCCATTATTTATGGCCTAACTATAATCATTTTGGTGAGA
453 ATTTGCCAACCCTCAATGCCTTTCTTTCCATTATTTATGACCTAACTATAATCATTTCGGTGAGA
** * * *
519 TTAGTCCACTGTGAAGTTTTTATCTCATTTGCAACACATTTTATTTTGGGCCTATCGGGGCCCAT
518 TTAGAACACTGTGAAGTTTTTAGCTCATTTGCAACACATTTTATTTTGGGCATATCGAGGCCCAT
* * *
584 TAGTTCCGTTTTGATTCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGC
583 TAGTTCCGTTTTAAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCAATTGTTTATGGC
* * * *
649 CTAACTATAATCATTTTGGTGAAATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAATAGATTT
648 CTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGT
* *
714 TATTTTGGGCCTATCTAGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTAGACA
713 TATTTTGGACCTATCAAGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTAGACA
* *
770 AACACTCAATGCTTTTCTCTTCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCC
1 AAC-CTCAATGCTTTTCTATTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
*
835 ACTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGTCCATTAGTGAC
65 ACTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
900 GTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTA
130 GTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTA
* *
965 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTATTTTT
195 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACATGTTATTTTG
* *
1030 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCCTCTTCGATTTGGCAACCCTCAATGCTTTTC
260 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCCTCTTCGATTAGGCAAACCTCAATGCTTTTC
* *
1095 TTTCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATTAGAACATTGTGAAGTT-TTAGC
325 TATCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATTAGAACACTGTGAAGTTCTTAGC
* * * *
1159 TCATTTGGAACACTTGTTATTTTGGGTCTATCAAGGCCCATTAGTGACGTTTTGAATCGTCATT-
390 TCATTTGGAACACTTATTATTTTGAGCCTATCAAGGCCCA-T-GTGAAGTTTTGAATCGTC-TTC
* *
1223 GATTTGCCAACCCTCAATGCTTTTCTTTCCATTGTTTATGACCTAACTATAATCATTTCGGTGAG
452 GATTTGCCAACCCTCAATGCCTTTCTTTCCATTATTTATGACCTAACTATAATCATTTCGGTGAG
*
1288 ATTAGAACACTGTGAAGTTTTTAGCTCATTTGGAACAC-TTGTTATTTTGGGCATATCGAGGCCC
517 ATTAGAACACTGTGAAGTTTTTAGCTCATTTGCAACACATT-TTATTTTGGGCATATCGAGGCCC
*
1352 ATTAGTTCCGTTTTAAATCGTCTTTGATTTGGCAACCCTCAATGCTTTTCTTTCAATTGTTTATG
581 ATTAGTTCCGTTTTAAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCAATTGTTTATG
*
1417 GCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACAT
646 GCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACAT
* *
1482 GTTATTTTGGACCTATCAAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTAGGCA
711 GTTATTTTGGACCTATCAAGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTAGACA
*
1540 AACCTCAATGCTTTTCTATCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 AACCTCAATGCTTTTCTATTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
*
1605 CTGTGAAGTTTTTAGCTCATTTTC-AACACTCGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
66 CTGTGAAGTTTTTAGCTCA-TTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
* * *
1669 GTTTTGAATCGTCTTCGATTTGGCAACACTCAATGCCTTTCTTTCGATTGTTTATGGCCTAACTA
130 GTTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTA
* * *
1734 TAATCATTTTGGTGAGATTAGTCAACTGTGAAGTTTTTAGCTCATTTTCAACACTTGTTATTTTG
195 TAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACATGTTATTTTG
1799 GGCCTA
260 GGCCTA
Statistics
Matches: 954, Mismatches: 73, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
768 40 0.04
769 585 0.61
770 323 0.34
771 6 0.01
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (768 bp):
AACCTCAATGCTTTTCTATTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
CTGTGAAGTTTTTAGCTCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACG
TTTTGAATCGTCTTCGCTTTGGCAACCCTCAATGCCTTTCTTTCCATTGTTTATGGCCTAACTAT
AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACATGTTATTTTGG
GCCTATCGGGGCCCATTAGTTCCGTTTTGAATCCTCTTCGATTAGGCAAACCTCAATGCTTTTCT
ATCCATTGTTTATGGCCTAACTATAATAATTTCGGTGAGATTAGAACACTGTGAAGTTCTTAGCT
CATTTGGAACACTTATTATTTTGAGCCTATCAAGGCCCATGTGAAGTTTTGAATCGTCTTCGATT
TGCCAACCCTCAATGCCTTTCTTTCCATTATTTATGACCTAACTATAATCATTTCGGTGAGATTA
GAACACTGTGAAGTTTTTAGCTCATTTGCAACACATTTTATTTTGGGCATATCGAGGCCCATTAG
TTCCGTTTTAAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCAATTGTTTATGGCCTA
ACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACATGTTAT
TTTGGACCTATCAAGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTAGACA
Done.