Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012190.1 Corchorus olitorius cultivar O-4 contig12223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24043

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--174
33
2.2
32
94
2
122
34
28
7
30
1.84
700--758
29
2.0
29
100
0
118
44
27
0
28
1.55
900--930
15
2.1
15
100
0
62
61
6
12
19
1.53
979--1047
31
2.2
31
86
0
102
37
27
13
21
1.90
1433--1475
20
2.2
20
86
0
59
32
6
4
55
1.47
2094--2133
5
8.0
5
94
0
71
57
0
42
0
0.98
2359--2405
19
2.3
21
82
7
53
63
10
4
21
1.43
4671--5001
178
1.9
177
91
3
540
35
16
13
34
1.88
5720--5760
13
3.2
13
89
6
57
56
29
2
12
1.49
8849--9072
45
4.9
45
85
5
288
25
4
28
42
1.73
8857--9036
94
1.9
94
94
0
315
27
3
26
41
1.73
9434--9485
20
2.4
21
81
15
61
28
7
5
57
1.50
12371--12508
70
2.0
70
98
0
267
31
13
20
34
1.91
12477--12539
30
2.1
30
96
0
117
47
7
15
28
1.74
22848--22887
6
6.7
6
100
0
80
15
17
0
67
1.23

Tables:   1

The End!