Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012196.1 Corchorus olitorius cultivar O-4 contig12229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 839

Length: 1399
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37


Found at i:156 original size:58 final size:58

Alignment explanation


    Indices: 53--167  Score: 169
    Period size: 58  Copynumber: 2.0  Consensus size: 58

         43 ATAGCATCAT

                      *                                               
         53 GCCTCGGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
          1 GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA

                *                      *             *           *    
        111 GCCTTGGTCCGAAAACGTCTTTTTTTATGCATCTAAT-AAAGAACATGTCACTTGATA
          1 GCCTCGGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATA

        168 TTTGATTAAT


Statistics
Matches: 51,  Mismatches: 5, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  58   35  0.69
  59   16  0.31

ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Consensus pattern (58 bp):   
GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
Done.