Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012198.1 Corchorus olitorius cultivar O-4 contig12231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4549
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:486 original size:51 final size:50

Alignment explanation


    Indices: 385--487  Score: 120
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        375 GTTCTTCATA

                                            *         *       
        385 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCTTTTAGTGT
          1 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT

                                      *                *    *    
        435 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGAC-ATAAAAACACTGTATTCGTGT
          1 TTTT-TCTTGTTT-AGATCTTGTCTCAGGACAAT-AAAACACTCTATTAGTGT

              
        486 TT
          1 TT

        488 CTCTTTTAGA


Statistics
Matches: 45,  Mismatches: 5, Indels: 5
        0.82            0.09        0.09

Matches are distributed among these distances:
  50    6  0.13
  51   38  0.84
  52    1  0.02

ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46


Consensus pattern (50 bp):   
TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT
Done.