genome.fa.s12199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012199.1 Corchorus olitorius cultivar O-4 contig12232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66260

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2219--2244	2	13.0	2	100	0	52	50	0	0	50	1.00
3283--3321	2	19.5	2	100	0	78	51	0	0	48	1.00
7140--7189	26	1.9	26	100	0	100	36	10	20	34	1.86
8785--8819	17	1.9	19	88	11	56	40	0	17	42	1.49
12933--12968	13	2.7	13	91	4	54	33	5	19	41	1.75
13498--13741	109	2.2	106	82	11	280	38	7	11	41	1.71
13908--14043	68	2.0	69	86	4	195	49	13	11	25	1.76
14851--14997	75	2.0	74	81	6	172	40	14	26	19	1.89
16015--16059	14	3.2	14	84	9	56	20	6	20	53	1.67
16020--16066	14	3.4	14	88	8	69	19	8	23	48	1.75
16350--16383	2	17.0	2	100	0	68	50	0	0	50	1.00
17929--17964	2	18.5	2	94	5	65	50	0	0	50	1.00
18227--18261	18	1.9	18	100	0	70	28	5	22	42	1.76
22493--22543	25	2.0	27	88	7	79	54	25	7	11	1.63
24315--24344	15	2.0	15	93	0	51	0	3	6	90	0.56
24862--24910	24	2.0	24	92	0	80	18	14	38	28	1.90
37799--37858	21	2.7	21	84	7	57	13	28	3	55	1.54
39043--39071	11	2.5	12	88	11	51	55	6	37	0	1.27
39030--39082	27	2.0	27	96	0	97	54	7	37	0	1.29
39030--39083	16	3.7	16	74	23	64	55	7	37	0	1.28
39547--39585	10	3.7	10	80	12	51	64	0	30	5	1.15
39543--39598	22	2.5	22	100	0	112	66	0	30	3	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42128--42204	39	2.0	39	94	0	136	37	9	9	44	1.68
43508--43705	99	2.0	99	96	2	362	37	14	12	36	1.83
45395--45479	22	3.8	22	77	12	84	40	22	9	28	1.85
45395--45545	67	2.3	67	84	2	187	35	18	12	33	1.89
45415--45539	22	5.6	23	71	5	87	33	16	13	36	1.87
47408--47496	45	2.0	45	91	4	144	34	5	20	39	1.76
47785--47922	70	1.9	74	86	7	203	50	6	18	24	1.71
49207--49257	26	2.0	26	96	0	93	43	3	1	50	1.31
52315--52426	58	1.9	58	87	8	167	51	3	7	37	1.47
52532--52576	19	2.3	19	84	7	54	13	11	6	68	1.37
52849--53063	108	2.0	109	93	0	369	32	9	13	45	1.76
55640--55668	4	7.2	4	100	0	58	48	0	0	51	1.00
57323--57352	13	2.3	13	100	0	60	86	0	13	0	0.57
58765--58802	19	2.0	19	89	0	58	2	21	50	26	1.62
59640--59678	21	1.9	21	89	5	62	10	41	5	43	1.61

Tables:   1

The End!