Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012201.1 Corchorus olitorius cultivar O-4 contig12234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22812

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9693--9787
47
2.0
47
93
0
163
43
3
33
20
1.67
9995--10139
77
1.9
78
95
1
265
45
10
20
24
1.81
10134--10247
33
3.5
33
97
0
210
12
42
35
9
1.75
10134--10260
66
1.9
66
90
0
200
13
42
35
8
1.75
10534--10576
15
2.9
14
82
6
50
39
0
23
37
1.55
11506--11540
11
3.2
11
91
0
61
80
17
2
0
0.84
12930--12972
17
2.6
16
85
10
59
20
23
20
34
1.96
13637--13825
105
1.8
105
94
0
333
46
13
12
26
1.80
13644--13859
105
2.1
104
83
5
265
48
13
13
24
1.78
15834--15872
20
1.9
21
89
5
62
41
20
0
38
1.53
17521--17561
19
2.2
19
100
0
82
21
19
26
31
1.97
17936--17977
17
2.4
18
84
4
59
38
21
4
35
1.75

Tables:   1

The End!