Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012203.1 Corchorus olitorius cultivar O-4 contig12236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87712

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
733--954
109
2.0
109
95
0
399
30
22
20
26
1.98
1742--1781
21
1.9
21
94
0
71
35
22
15
27
1.94
3560--3595
19
1.9
18
88
5
54
41
2
22
33
1.68
15885--15951
33
2.0
33
100
0
134
31
20
11
35
1.89
24973--25023
24
2.1
24
92
0
84
25
13
9
50
1.72
24978--25031
24
2.2
24
83
0
63
24
11
12
51
1.72
28683--28726
24
2.0
22
86
13
63
38
34
0
27
1.57
30670--30821
72
2.1
72
84
9
204
42
24
9
24
1.83
32901--32948
20
2.4
20
100
0
96
14
39
14
31
1.86
34424--34457
18
1.9
18
88
5
52
41
38
20
0
1.53
42285--42365
27
3.3
25
80
16
98
45
3
6
44
1.46
42316--42365
15
3.5
15
71
18
52
46
4
6
44
1.47
45492--45525
17
2.0
17
94
0
59
35
14
14
35
1.87
47342--47366
10
2.5
10
100
0
50
68
0
32
0
0.90
47495--47552
2
32.5
2
72
27
51
51
1
0
46
1.11
47495--47552
11
5.5
11
71
22
52
51
1
0
46
1.11
47495--47553
13
4.6
13
76
18
61
52
1
0
45
1.10
49942--49973
2
16.0
2
100
0
64
50
0
0
50
1.00
51161--51213
26
2.0
27
92
3
90
39
11
9
39
1.74
52442--52480
11
3.7
10
86
10
51
82
2
15
0
0.79
56353--56379
13
2.1
13
100
0
54
7
44
14
33
1.73
62894--62997
52
2.0
52
100
0
208
38
11
7
42
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63223--63293
35
2.0
35
100
0
142
28
22
18
30
1.97
64873--64970
49
2.0
49
89
0
151
32
20
16
30
1.94
70326--70366
21
2.0
21
85
0
55
39
14
19
26
1.90
70642--70676
18
1.9
18
88
0
52
82
2
11
2
0.88
71712--71801
27
3.2
27
76
17
110
41
7
8
42
1.65
71700--71805
31
3.5
30
76
17
121
41
6
8
43
1.61
71786--71821
2
17.5
2
94
5
63
47
2
0
50
1.15
77025--77066
16
2.4
18
80
15
52
2
50
11
35
1.52
77244--77277
13
2.8
12
82
8
50
32
0
2
64
1.08
77298--77353
27
2.1
27
87
9
80
26
5
1
66
1.23
82860--82898
4
9.8
4
100
0
78
48
0
0
51
1.00
83698--83729
7
4.6
7
100
0
64
62
0
37
0
0.95
85109--85155
21
2.2
21
85
7
60
6
27
40
25
1.80

Tables:   1

The End!