Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012207.1 Corchorus olitorius cultivar O-4 contig12240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:162 original size:21 final size:21

Alignment explanation


    Indices: 136--175  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        126 GCATCTTAGG

                                 
        136 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *            
        157 CAACTCTGATGAGCTTGAA
          1 CAACTCCGATGAGCTTGAA

        176 CTTCTTCCTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC
Done.