Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012208.1 Corchorus olitorius cultivar O-4 contig12241, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 848

Length: 1414
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30


Found at i:206 original size:25 final size:24

Alignment explanation


    Indices: 170--216  Score: 69
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        160 TCCTTCTATT

                                    
        170 CATCTATCATC-AAGTTTTTCATC
          1 CATCTATCATCAAAGTTTTTCATC

                                    
        193 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATCAAAGTTTTTCA

        217 AATTTTCTAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    2  0.10
  25    4  0.19
  26   10  0.48

ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40


Consensus pattern (24 bp):   
CATCTATCATCAAAGTTTTTCATC

Found at i:1170 original size:16 final size:16

Alignment explanation


    Indices: 1149--1179  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1139 TTGGGGGTTC

                            
       1149 AAAATCAACAAGCTCA
          1 AAAATCAACAAGCTCA

                  *        
       1165 AAAATCGACAAGCTC
          1 AAAATCAACAAGCTC

       1180 CACTAAGAGA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.52, C:0.26, G:0.10, T:0.13


Consensus pattern (16 bp):   
AAAATCAACAAGCTCA
Done.