Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012211.1 Corchorus olitorius cultivar O-4 contig12244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3670
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31


Found at i:385 original size:12 final size:11

Alignment explanation


    Indices: 357--385  Score: 58
    Period size: 11  Copynumber: 2.6  Consensus size: 11

        347 AATTTTTTTT

                       
        357 TATTTTTGAAA
          1 TATTTTTGAAA

                       
        368 TATTTTTGAAA
          1 TATTTTTGAAA

                   
        379 TATTTTT
          1 TATTTTT

        386 CGATTGAACT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62


Consensus pattern (11 bp):   
TATTTTTGAAA
Done.