Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012212.1 Corchorus olitorius cultivar O-4 contig12245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13109

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--730
125
5.3
125
94
0
1143
30
16
18
35
1.93
76--730
249
2.6
250
94
0
1145
30
16
18
35
1.93
661--798
68
2.0
68
98
0
267
24
10
21
44
1.83
729--1047
125
2.6
124
93
0
557
27
15
19
36
1.93
412--1360
317
3.0
317
97
0
1772
28
15
19
36
1.92
978--1115
68
2.0
68
97
0
258
25
10
20
44
1.82
854--1240
192
2.0
193
92
0
650
28
14
18
37
1.91
163--1360
442
2.7
442
78
9
1552
28
15
18
36
1.92
1046--1356
125
2.5
125
95
0
550
29
15
19
35
1.93
1874--2011
68
2.0
68
97
0
258
25
10
21
43
1.83
1942--2261
126
2.5
126
93
2
563
28
15
20
36
1.93
2193--2330
68
2.0
68
97
0
258
24
10
20
44
1.82
1748--2446
319
2.2
317
98
0
1353
28
15
19
36
1.92
2067--2450
193
2.0
193
95
1
689
28
14
19
37
1.91
10233--10316
30
3.1
30
62
25
76
21
25
25
28
1.99
10202--10318
52
2.2
52
93
0
207
23
26
23
27
2.00

Tables:   1

The End!