Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012218.1 Corchorus olitorius cultivar O-4 contig12251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1785
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:356 original size:25 final size:22

Alignment explanation


    Indices: 304--356  Score: 61
    Period size: 25  Copynumber: 2.2  Consensus size: 22

        294 CCTATCCTTC

                                * 
        304 TATCCATCTATCATCAAGTTTT
          1 TATCCATCTATCATCAAGTTCT

                                      
        326 TCATCCATCTCATTCATCAAAGTTCT
          1 T-ATCCATCT-A-TCATC-AAGTTCT

                 
        352 TATCC
          1 TATCC

        357 CAACTTTCAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  22    1  0.04
  23    8  0.31
  24    1  0.04
  25    9  0.35
  26    7  0.27

ACGTcount: A:0.26, C:0.28, G:0.04, T:0.42


Consensus pattern (22 bp):   
TATCCATCTATCATCAAGTTCT
Done.