Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001222.1 Corchorus olitorius cultivar O-4 contig01222, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 951

Length: 1586
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39


Found at i:1204 original size:78 final size:78

Alignment explanation


    Indices: 1115--1273  Score: 264
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       1105 AGATTTATAG

                             *                                          * *  
       1115 TTTTACTCAACTAAAAACTCTATTTTTATTTAACTAAATCTAATATCTTTATAACTATTTTATTT
          1 TTTTACTCAACTAAAAAATCTATTTTTATTTAACTAAATCTAATATCTTTATAACTATTTCAGTT

                    *    
       1180 TACCATTTTACTA
         66 TACCATTTAACTA

                                             *     *                         
       1193 TTTTACTCAACTAAAAAATCTATTTTTATTTAATTAAATTTAATATCTTTATAACTATTTCAGTT
          1 TTTTACTCAACTAAAAAATCTATTTTTATTTAACTAAATCTAATATCTTTATAACTATTTCAGTT

                         
       1258 TACCATTTAACTA
         66 TACCATTTAACTA

               
       1271 TTT
          1 TTT

       1274 CAACTAGAAA


Statistics
Matches: 75,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  78   75  1.00

ACGTcount: A:0.35, C:0.14, G:0.01, T:0.50


Consensus pattern (78 bp):   
TTTTACTCAACTAAAAAATCTATTTTTATTTAACTAAATCTAATATCTTTATAACTATTTCAGTT
TACCATTTAACTA
Done.