Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012224.1 Corchorus olitorius cultivar O-4 contig12257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1792
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38


Found at i:790 original size:15 final size:15

Alignment explanation


    Indices: 770--821  Score: 61
    Period size: 15  Copynumber: 3.5  Consensus size: 15

        760 ATTTAGACTT

                    *      
        770 ATTATTATTATAATA
          1 ATTATTATAATAATA

                        *   
        785 ATTATTA-AACTTATA
          1 ATTATTATAA-TAATA

                 *         
        800 ATTATAATAATAATA
          1 ATTATTATAATAATA

                   
        815 ATTATTA
          1 ATTATTA

        822 GTGGTATGTA


Statistics
Matches: 30,  Mismatches: 5, Indels: 4
        0.77            0.13        0.10

Matches are distributed among these distances:
  14    1  0.03
  15   27  0.90
  16    2  0.07

ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48


Consensus pattern (15 bp):   
ATTATTATAATAATA

Found at i:797 original size:27 final size:27

Alignment explanation


    Indices: 766--818  Score: 79
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        756 GTTAATTTAG

                  *     *        *     
        766 ACTTATTATTATTATAATAATTATTAA
          1 ACTTATAATTATAATAATAATAATTAA

                                      
        793 ACTTATAATTATAATAATAATAATTA
          1 ACTTATAATTATAATAATAATAATTA

        819 TTAGTGGTAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47


Consensus pattern (27 bp):   
ACTTATAATTATAATAATAATAATTAA
Done.