Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012227.1 Corchorus olitorius cultivar O-4 contig12260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3176
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Found at i:949 original size:7 final size:7

Alignment explanation


    Indices: 937--967  Score: 62
    Period size: 7  Copynumber: 4.4  Consensus size: 7

        927 TCATGCATTT

                   
        937 TTGTGAA
          1 TTGTGAA

                   
        944 TTGTGAA
          1 TTGTGAA

                   
        951 TTGTGAA
          1 TTGTGAA

                   
        958 TTGTGAA
          1 TTGTGAA

               
        965 TTG
          1 TTG

        968 ATTAGTTTAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   24  1.00

ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45


Consensus pattern (7 bp):   
TTGTGAA

Done.