Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012229.1 Corchorus olitorius cultivar O-4 contig12262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3167
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31


Found at i:2255 original size:21 final size:21

Alignment explanation


    Indices: 2231--2347  Score: 166
    Period size: 21  Copynumber: 5.6  Consensus size: 21

       2221 CTTAGGCATT

                    *    *       
       2231 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                    *            
       2252 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                 
       2273 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                  
       2294 TCCAATGAACTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                    *             
       2315 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                        
       2336 TCCAATGAACTT
          1 TCCAATGAACTT

       2348 CTAGCATCTT


Statistics
Matches: 90,  Mismatches: 5, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21   87  0.97

ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30


Consensus pattern (21 bp):   
TCCAATGAACTTGGAACCTTC

Done.