Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001223.1 Corchorus olitorius cultivar O-4 contig01223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42


Found at i:637 original size:69 final size:71

Alignment explanation


    Indices: 514--647  Score: 193
    Period size: 69  Copynumber: 1.9  Consensus size: 71

        504 AAATGCATTG

                                                         *    *              
        514 TCTTTATATGTAATTTTAGCATTTGGATGTAATTAAAGGTGTTCATACT-GTTTTTT-CCTTAGT
          1 TCTTTATATGTAATTTTAGCATTTGGATGTAATTAAAGGTGTTCACACTATTTTTTTCCCTTAGT

                  
        577 GTTTTT
         66 GTTTTT

                                                *        *  *                
        583 TCTTTATATGTAATTTTAGCA-TTGAGATGTAATTACAGGTGTTCCCATTATTTTTTTCCCTTAG
          1 TCTTTATATGTAATTTTAGCATTTG-GATGTAATTAAAGGTGTTCACACTATTTTTTTCCCTTAG

             
        647 T
         65 T

        648 TGTTAGTTTT


Statistics
Matches: 57,  Mismatches: 5, Indels: 4
        0.86            0.08        0.06

Matches are distributed among these distances:
  68    3  0.05
  69   41  0.72
  70    6  0.11
  71    7  0.12

ACGTcount: A:0.22, C:0.11, G:0.15, T:0.51


Consensus pattern (71 bp):   
TCTTTATATGTAATTTTAGCATTTGGATGTAATTAAAGGTGTTCACACTATTTTTTTCCCTTAGT
GTTTTT
Done.