Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012235.1 Corchorus olitorius cultivar O-4 contig12268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13641
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31


Found at i:3199 original size:21 final size:21

Alignment explanation


    Indices: 3174--3214  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3164 TTAGAAACCC

                                  
       3174 TAGTACCACTTAG-ATCCAATT
          1 TAGTACCACTT-GTATCCAATT

                                
       3195 TAGTACCACTTGTATCCAAT
          1 TAGTACCACTTGTATCCAAT

       3215 AGGGCTTCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    1  0.05
  21   18  0.95

ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34


Consensus pattern (21 bp):   
TAGTACCACTTGTATCCAATT

Found at i:6768 original size:21 final size:21

Alignment explanation


    Indices: 6744--6785  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6734 AATAGAAACC

                                 
       6744 TTAGTACCACTTAAATCCAAT
          1 TTAGTACCACTTAAATCCAAT

                        * *      
       6765 TTAGTACCACTTGACTCCAAT
          1 TTAGTACCACTTAAATCCAAT

       6786 AGGGTTTCAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.33, C:0.26, G:0.07, T:0.33


Consensus pattern (21 bp):   
TTAGTACCACTTAAATCCAAT
Done.