Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012236.1 Corchorus olitorius cultivar O-4 contig12269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25341

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4510--4566
4
15.0
4
90
7
84
80
0
19
0
0.71
7596--7654
27
2.2
25
83
13
82
47
28
5
18
1.70
9276--9316
21
2.0
21
95
0
73
29
21
17
31
1.96
9425--9456
3
10.7
3
100
0
64
65
0
0
34
0.93
11849--11873
1
25.0
1
100
0
50
100
0
0
0
0.00
13062--13110
20
2.4
22
86
13
77
36
22
6
34
1.79
13594--13687
45
2.2
43
86
7
138
37
22
6
34
1.80
15709--15749
21
2.0
20
90
4
64
34
26
17
21
1.95
17560--17705
33
4.5
31
78
10
123
42
21
8
27
1.82
20164--20205
21
2.0
21
95
0
75
33
26
19
21
1.97

Tables:   1

The End!