Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012237.1 Corchorus olitorius cultivar O-4 contig12270, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28259

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70--116
26
1.9
24
87
12
69
27
27
4
40
1.75
1051--1082
15
2.1
15
94
0
55
46
28
9
15
1.77
1668--1794
66
1.9
66
87
3
184
26
7
22
43
1.80
1675--1809
33
4.1
33
77
7
132
26
7
20
45
1.78
5776--5821
21
2.2
21
96
0
83
10
23
54
10
1.67
9859--9903
20
2.2
20
84
4
54
66
8
8
15
1.43
10733--10795
31
2.0
31
100
0
126
44
17
9
28
1.80
14862--14890
15
1.9
15
100
0
58
55
24
6
13
1.63
17177--17314
33
4.2
33
81
5
129
43
21
7
27
1.80
19565--19606
21
2.0
21
85
0
57
28
26
11
33
1.92
20925--20971
26
1.9
24
87
12
69
27
25
4
42
1.73

Tables:   1

The End!