Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012239.1 Corchorus olitorius cultivar O-4 contig12272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2112
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1587 original size:11 final size:11

Alignment explanation


    Indices: 1573--1606  Score: 68
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       1563 TAAAGGAAAA

                       
       1573 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
       1584 AGCTAGGAAGG
          1 AGCTAGGAAGG

                       
       1595 AGCTAGGAAGG
          1 AGCTAGGAAGG

             
       1606 A
          1 A

       1607 TCCTACTCCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.38, C:0.09, G:0.44, T:0.09


Consensus pattern (11 bp):   
AGCTAGGAAGG
Done.