Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012242.1 Corchorus olitorius cultivar O-4 contig12275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53472

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3259--3333
32
2.3
32
100
0
150
34
14
29
21
1.93
7782--7829
14
3.6
14
78
16
66
6
4
25
64
1.35
7780--7832
25
2.1
25
96
0
97
5
3
26
64
1.33
8874--8913
3
13.7
3
89
5
64
70
0
30
0
0.88
9040--9097
24
2.5
24
83
5
75
53
5
15
25
1.63
9067--9173
35
3.1
35
90
0
169
55
2
20
21
1.56
9067--9294
70
3.4
69
71
12
186
52
3
21
23
1.61
9149--9252
28
3.7
27
79
11
104
50
2
22
25
1.63
9268--9459
22
9.0
22
76
16
174
52
5
17
24
1.67
9223--9395
57
3.0
58
81
11
187
51
5
17
25
1.66
9317--9351
15
2.3
15
95
0
61
45
5
17
31
1.71
9298--9374
37
2.1
35
83
9
93
50
6
15
27
1.68
9332--9459
68
1.9
67
85
7
179
52
6
17
23
1.67
9496--9539
20
2.1
22
87
8
65
52
4
20
22
1.65
10506--10536
10
3.2
10
95
4
55
6
19
9
64
1.45
13734--13762
15
1.9
15
100
0
58
13
6
13
65
1.45
14967--15016
20
2.5
20
96
0
91
28
12
20
40
1.87
18402--18489
29
3.0
29
76
3
79
46
31
9
12
1.73
28011--28052
21
2.0
21
95
0
75
21
19
26
33
1.97
28986--29020
8
4.2
8
88
3
52
57
17
2
22
1.53
30531--30668
33
4.2
32
79
7
116
26
8
21
44
1.81
32488--32529
21
2.0
21
100
0
84
19
19
28
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42335--42381
11
4.7
10
80
17
53
40
6
21
31
1.78
42346--42381
19
1.9
18
88
5
54
41
2
22
33
1.68
43918--43942
6
4.2
6
100
0
50
0
16
0
84
0.63
46851--46882
11
2.8
12
86
13
50
43
15
9
31
1.78

Tables:   1

The End!