Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012245.1 Corchorus olitorius cultivar O-4 contig12278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6175

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1262
54
2.1
54
82
3
133
32
23
16
27
1.96
1233--1309
37
2.1
37
95
0
136
27
19
16
36
1.93
1277--1401
51
2.5
51
88
2
182
35
20
13
30
1.92
1451--1501
16
3.2
16
81
10
59
45
3
23
27
1.70
1451--1512
24
2.6
24
85
7
74
43
4
25
25
1.74
1564--1995
35
12.3
35
82
3
447
39
19
21
20
1.93
1564--1996
105
4.1
105
85
2
492
39
19
21
20
1.93
1997--2143
78
1.9
77
94
1
258
39
19
18
22
1.92
3652--3711
29
2.0
30
87
6
86
35
18
8
38
1.81
4210--4280
26
2.7
26
76
6
72
38
23
19
18
1.93
4515--4720
89
2.3
88
83
4
245
30
27
16
26
1.96
4683--4882
42
4.8
42
90
1
296
28
29
17
25
1.97
4965--5042
37
2.1
38
95
2
140
26
19
17
35
1.94
5009--5134
51
2.5
49
84
3
144
34
19
15
30
1.92
5184--5234
16
3.2
16
81
10
59
45
1
23
29
1.64
5193--5245
24
2.3
23
86
3
70
43
3
26
26
1.72
5200--5247
23
2.0
24
92
4
80
45
4
22
27
1.70
5297--6114
35
23.2
35
77
7
393
39
20
20
19
1.93
5297--6114
70
11.6
69
79
6
435
39
20
20
19
1.93
5297--5798
106
4.8
104
80
6
297
39
19
20
20
1.93
5396--6175
106
7.3
106
81
4
768
39
22
19
18
1.92
5607--6175
142
4.0
143
85
5
737
40
24
18
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5607--6175
214
2.7
211
85
5
781
40
24
18
16
1.90

Tables:   1

The End!