Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012246.1 Corchorus olitorius cultivar O-4 contig12279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10910

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1808--2499
71
9.7
71
79
6
668
40
23
19
16
1.91
1805--2499
35
19.5
35
77
6
608
40
23
18
16
1.91
1805--2492
213
3.2
212
86
4
990
40
23
18
16
1.91
3676--3724
25
2.0
25
84
8
64
6
20
0
73
1.04
3702--3751
12
4.5
10
81
18
55
2
16
0
82
0.77
3705--3752
13
3.8
13
78
13
55
2
16
0
81
0.79
3721--3762
15
2.7
15
85
7
57
4
16
0
78
0.91
3701--3758
22
2.6
21
75
20
64
5
15
0
79
0.90
3815--3862
21
2.2
22
82
14
55
31
12
6
50
1.65
5592--5692
42
2.4
41
83
3
121
41
13
21
22
1.89
5616--5710
42
2.3
42
87
5
131
42
10
22
25
1.85
6700--6766
4
17.5
4
69
9
50
62
1
7
28
1.31
6695--6766
11
6.0
12
74
19
62
62
1
8
27
1.32
6687--6766
15
5.3
15
73
15
67
62
2
7
27
1.35
6701--6779
27
3.1
26
81
18
96
63
2
7
26
1.34
9214--9463
41
6.1
41
86
5
294
47
16
15
20
1.83
10636--10662
12
2.2
12
100
0
54
55
18
7
18
1.65

Tables:   1

The End!