genome.fa.s12247.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012247.1 Corchorus olitorius cultivar O-4 contig12280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39657

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199--248	24	2.1	24	88	0	73	48	14	16	22	1.81
4096--4256	82	2.0	81	95	1	286	32	11	17	38	1.86
6781--6816	6	5.7	6	90	9	54	38	13	0	47	1.44
6781--6816	13	2.8	13	95	4	65	38	13	0	47	1.44
7105--7151	25	1.9	24	95	4	85	29	8	8	53	1.61
8153--8222	36	1.9	36	91	0	113	60	7	11	21	1.55
9488--9602	58	2.0	58	89	3	178	33	21	14	30	1.94
13095--13126	16	2.0	16	93	0	55	53	6	12	28	1.62
19140--19176	18	2.1	18	89	0	56	24	8	27	40	1.83
22818--22872	27	2.0	28	85	3	76	5	27	7	60	1.46
28614--28638	13	1.9	13	100	0	50	44	32	0	24	1.54
28906--28955	13	3.8	13	78	0	55	30	28	6	36	1.81
28903--28966	26	2.4	27	84	5	78	28	28	7	35	1.85
30708--30834	46	3.1	39	77	15	137	29	13	25	32	1.93
30748--30984	46	5.1	46	89	2	330	32	15	21	30	1.94
30700--30984	94	3.1	91	82	6	348	32	15	21	30	1.95
31347--31407	30	2.0	30	93	6	106	29	18	31	21	1.96
31394--31581	50	4.4	44	72	18	155	32	17	21	28	1.96
31400--31544	77	1.9	78	94	1	256	33	18	20	27	1.96
31737--31867	42	3.1	42	95	0	226	26	31	18	23	1.97
31768--31845	23	3.6	23	74	13	92	24	32	20	23	1.98
31749--31871	19	6.1	19	71	14	84	28	32	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31916--32012	14	6.9	14	84	2	124	34	28	17	19	1.95
31904--31998	28	3.4	28	95	0	163	33	28	16	21	1.95
32029--32172	53	2.7	53	87	0	207	29	30	17	22	1.96
32079--32197	25	4.6	25	77	6	121	28	30	18	22	1.97
32063--32249	39	4.8	39	70	17	138	31	29	16	22	1.96
32052--32147	14	7.1	14	67	11	56	33	31	14	20	1.93
32188--32300	52	2.2	53	95	1	201	32	30	15	21	1.94
32066--32288	116	1.9	117	94	0	394	29	30	17	22	1.97
32200--32288	25	3.5	25	66	11	72	29	30	17	22	1.97
32518--32589	39	1.9	38	83	8	94	22	18	22	37	1.94
32585--32792	111	1.9	111	93	2	364	32	23	23	21	1.98
34853--34884	13	2.5	13	94	0	55	78	9	0	12	0.97
34880--34916	15	2.3	17	90	9	60	75	8	10	5	1.17
34879--34916	17	2.3	18	82	17	55	76	7	10	5	1.15
36241--36462	87	2.5	88	79	4	234	35	25	8	31	1.85

Tables:   1

The End!