Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012249.1 Corchorus olitorius cultivar O-4 contig12282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22125

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2155--2187
16
2.1
16
88
11
50
3
27
39
30
1.72
5174--5211
3
12.7
3
88
0
58
73
0
26
0
0.83
5171--5208
9
4.2
9
96
0
67
76
0
23
0
0.79
5758--5863
16
6.6
16
82
8
144
6
14
41
37
1.72
5758--5863
32
3.3
32
90
2
169
6
14
41
37
1.72
5852--5894
6
7.3
6
81
5
52
2
18
48
30
1.60
5853--5894
12
3.6
12
80
6
59
2
19
50
28
1.60
6728--6770
16
2.7
16
81
0
50
6
13
41
37
1.72
9959--10548
296
2.0
293
90
1
939
42
16
15
24
1.87
21858--21908
26
1.9
27
96
4
95
52
11
0
35
1.38
21860--21910
16
3.6
16
65
29
51
50
11
0
37
1.39

Tables:   1

The End!