Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012252.1 Corchorus olitorius cultivar O-4 contig12285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3090
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32


Found at i:1329 original size:9 final size:9

Alignment explanation


    Indices: 1315--1339  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1305 ATGAACTAAA

                     
       1315 TTTATCAAC
          1 TTTATCAAC

                     
       1324 TTTATCAAC
          1 TTTATCAAC

                   
       1333 TTTATCA
          1 TTTATCA

       1340 TAAAAATGGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48


Consensus pattern (9 bp):   
TTTATCAAC
Done.