Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012256.1 Corchorus olitorius cultivar O-4 contig12289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36044

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
378--441
33
1.9
33
87
0
92
31
23
20
25
1.98
2957--3049
48
1.9
48
95
4
170
40
20
13
24
1.89
6963--6990
3
9.3
3
100
0
56
67
0
32
0
0.91
9753--9790
19
2.0
20
94
5
69
47
18
0
34
1.49
11081--11125
19
2.4
18
85
10
56
42
2
2
53
1.25
13318--13353
2
18.0
2
100
0
72
50
0
0
50
1.00
24182--24257
24
3.1
24
80
1
89
28
18
31
21
1.97
25353--25387
11
3.2
11
91
0
61
0
2
17
80
0.84
26095--26396
130
2.3
133
78
11
336
36
9
20
33
1.86
26032--26559
66
7.9
66
71
12
297
37
9
19
34
1.84
26010--26409
22
18.3
22
73
11
180
35
9
19
35
1.85
26411--26559
22
6.6
22
70
14
99
40
9
16
32
1.81
26800--26954
22
7.0
22
68
2
114
33
5
18
42
1.73
29433--29510
36
2.2
37
88
11
126
15
14
19
51
1.77
29833--29868
19
1.9
20
88
11
58
30
0
0
69
0.89

Tables:   1

The End!