Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001226.1 Corchorus olitorius cultivar O-4 contig01226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:545 original size:21 final size:21

Alignment explanation


    Indices: 475--525  Score: 77
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        465 AGGGATCGAG

                          *       
        475 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                                 
        496 CTGGGCGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                     
        517 CTGGGCGCT
          1 CTGGGCGCT

        526 TGGGCGTTCT


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  21   24  0.86
  22    4  0.14

ACGTcount: A:0.06, C:0.31, G:0.39, T:0.24


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC
Done.