Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012260.1 Corchorus olitorius cultivar O-4 contig12293, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26448

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1901--2286
37
10.6
35
84
4
344
47
11
17
23
1.79
1901--2286
74
5.3
73
83
5
392
47
11
17
23
1.79
1901--2291
111
3.6
110
84
5
431
47
10
17
23
1.79
2266--2443
35
5.1
34
82
8
157
46
10
16
26
1.79
2197--2432
71
3.3
70
82
10
225
47
11
15
25
1.79
2232--2430
106
1.9
107
82
3
258
47
11
16
25
1.79
2193--2452
36
7.3
36
80
8
232
48
11
15
25
1.78
10716--10754
14
2.6
15
88
8
53
38
0
20
41
1.53
13826--13926
50
2.0
50
92
0
166
35
13
15
34
1.88
14205--14253
14
3.4
14
81
13
64
14
16
0
69
1.19
14216--14265
22
2.2
23
82
13
68
18
14
0
68
1.22
14205--14267
27
2.4
27
84
12
78
15
14
0
69
1.18
14561--14593
7
4.9
7
85
7
50
24
18
0
57
1.40
14569--14596
13
2.2
13
100
0
56
21
21
0
57
1.41
15484--15635
75
2.0
75
91
2
243
30
25
8
34
1.86
20580--20624
23
2.0
22
82
4
54
17
6
8
66
1.40

Tables:   1

The End!